PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019175056.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C3H

Protein Properties

Length: 473aa MW: 49747.8 Da PI: 8.0188

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019175056.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	38.2	2.5e-12	52	76	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C +++rtG+C yGdrC+F+H++ XP_019175056.1 52 EADCIYYLRTGFCGYGDRCRFNHPR 76 689********************96 PP
2	zf-CCCH	37.1	5.3e-12	98	122	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++rtG Ck+G++Ck++H++ XP_019175056.1 98 QPVCQYYMRTGMCKFGASCKYHHPR 122 689********************96 PP
3	zf-CCCH	34.2	4.2e-11	143	168	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++ +tG+Ck+G +CkF+H++ XP_019175056.1 143 GEKECSYYVKTGQCKFGITCKFHHPQ 168 7899********************97 PP
4	zf-CCCH	37.9	2.9e-12	313	339	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++++tG Ck+G++C+++H+p XP_019175056.1 313 PGEPECQHYMKTGDCKFGSSCRYHHPP 339 5799*********************97 PP
5	zf-CCCH	31.5	3e-10	361	385	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++C++++ +G C++G++CkF H++ XP_019175056.1 361 APICSHYSVNGVCNFGPSCKFDHPM 385 589********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 473 aa Download sequence
MERSSGTQAM EGTSVDPVAE WMAPGGETGL EEPMWQLTLG GGSESYPERP NEADCIYYLR 60 TGFCGYGDRC RFNHPRDRSL TVGAMRSSGA EYPERVGQPV CQYYMRTGMC KFGASCKYHH 120 PRQGGGSPAP VALNIYGCPL RPGEKECSYY VKTGQCKFGI TCKFHHPQPA GIQVPAPNPG 180 PGPLPAPTAV PPPAIYPIMQ SPVQSSQQYG IMPGNWSVPR PVLFPGSYIP GTYSPMLLPP 240 GLVPVPGSWT PYPAPLSPVA SPNTQTTSGA GSVYGFTQLS SSAPAYSGTY VSVASSVTPS 300 AGSQKEHAYP QRPGEPECQH YMKTGDCKFG SSCRYHHPPD WSGPKTNLLL GPMGLPLRPG 360 APICSHYSVN GVCNFGPSCK FDHPMGTISY SPSASSLADI PTAPYPVGSA IGNLALPSSG 420 LRPDLISGSN TRTYSKTGPP AHSGTQQSGQ QSFSSSGGSS TGHGHGGEVS TSS

Sequence ? help Back to Top

Protein Sequence Length: 473 aa Download sequence

MERSSGTQAM EGTSVDPVAE WMAPGGETGL EEPMWQLTLG GGSESYPERP NEADCIYYLR  60
TGFCGYGDRC RFNHPRDRSL TVGAMRSSGA EYPERVGQPV CQYYMRTGMC KFGASCKYHH  120
PRQGGGSPAP VALNIYGCPL RPGEKECSYY VKTGQCKFGI TCKFHHPQPA GIQVPAPNPG  180
PGPLPAPTAV PPPAIYPIMQ SPVQSSQQYG IMPGNWSVPR PVLFPGSYIP GTYSPMLLPP  240
GLVPVPGSWT PYPAPLSPVA SPNTQTTSGA GSVYGFTQLS SSAPAYSGTY VSVASSVTPS  300
AGSQKEHAYP QRPGEPECQH YMKTGDCKFG SSCRYHHPPD WSGPKTNLLL GPMGLPLRPG  360
APICSHYSVN GVCNFGPSCK FDHPMGTISY SPSASSLADI PTAPYPVGSA IGNLALPSSG  420
LRPDLISGSN TRTYSKTGPP AHSGTQQSGQ QSFSSSGGSS TGHGHGGEVS TSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.1	1e-134	C3H family protein