PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019175245.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Trihelix

Protein Properties

Length: 657aa MW: 72093.5 Da PI: 6.5249

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019175245.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	97.6	1.1e-30	71	155	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+laL+++r++m+ +r+++lk+plWeevs+km+e g++rs+k+Ckek+en+ k++k++k+g+ ++ + +t+++fdqlea XP_019175245.1 71 RWPRQETLALLKIRSDMDVVFRDSSLKGPLWEEVSRKMAELGYHRSSKKCKEKFENVYKYHKRTKDGRASK--ADGKTYRFFDQLEA 155 8******************************************************************96..66678*****85 PP
2	trihelix	102.8	2.5e-32	474	558	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+k ev+aLi++r++++ +++++ k+plWee+s mr+ g++r++k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ l+ XP_019175245.1 474 RWPKTEVQALIQLRTNLDMKYQENGPKGPLWEEISTGMRKLGYNRNAKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHLLD 558 8*******************************************************************8.99*******998 PP

Sequence ? help Back to Top
Protein Sequence Length: 657 aa Download sequence
MLGVSGLISA AADGAAPPEA PESGGAGSAA GGGGNSSDVG GAAAGALTGG YGEEDKAGRL 60 EEAERNSGGN RWPRQETLAL LKIRSDMDVV FRDSSLKGPL WEEVSRKMAE LGYHRSSKKC 120 KEKFENVYKY HKRTKDGRAS KADGKTYRFF DQLEAFEHTP SHALALPPPP RPQPPLPPAA 180 VSPMVAPTPL PGINNNNNNA AASNASTTNV AANPPPPVQV PAQVTVPSTQ NPFGAGVHNP 240 INAPAFPPSS QTRSLSLPPQ PAANTGGFPS QRNIPGSPMS DSTSSSTSSD EDIQRRHRRK 300 RKWKDFFERL MKDVIEKQEE LQKRFLEALE KRERDRMVRE EAWRVQEMAR MNREHDLLVQ 360 ERSMAAAKDA AVLQFLQKVS EQHNLQIPIT NATTPAQIQI QLPESLSTPT PQPPPPPIPP 420 QSQQQPPQGP EPISVAPPAT MPFTISTPTP PVPTKIMDVS KAADESFTPA SSSRWPKTEV 480 QALIQLRTNL DMKYQENGPK GPLWEEISTG MRKLGYNRNA KRCKEKWENI NKYFKKVKES 540 NKKRPEDSKT CPYFHLLDAI YKEKSKNEAS FNPPGSALKP ENNPMVPIMV QPEQQWPLPP 600 EHHHHHHPLN DHESDNIDEE DDGDDDDDED DDEGGGGYEI VTNKPPSTAT TTATSTV

Sequence ? help Back to Top

Protein Sequence Length: 657 aa Download sequence

MLGVSGLISA AADGAAPPEA PESGGAGSAA GGGGNSSDVG GAAAGALTGG YGEEDKAGRL  60
EEAERNSGGN RWPRQETLAL LKIRSDMDVV FRDSSLKGPL WEEVSRKMAE LGYHRSSKKC  120
KEKFENVYKY HKRTKDGRAS KADGKTYRFF DQLEAFEHTP SHALALPPPP RPQPPLPPAA  180
VSPMVAPTPL PGINNNNNNA AASNASTTNV AANPPPPVQV PAQVTVPSTQ NPFGAGVHNP  240
INAPAFPPSS QTRSLSLPPQ PAANTGGFPS QRNIPGSPMS DSTSSSTSSD EDIQRRHRRK  300
RKWKDFFERL MKDVIEKQEE LQKRFLEALE KRERDRMVRE EAWRVQEMAR MNREHDLLVQ  360
ERSMAAAKDA AVLQFLQKVS EQHNLQIPIT NATTPAQIQI QLPESLSTPT PQPPPPPIPP  420
QSQQQPPQGP EPISVAPPAT MPFTISTPTP PVPTKIMDVS KAADESFTPA SSSRWPKTEV  480
QALIQLRTNL DMKYQENGPK GPLWEEISTG MRKLGYNRNA KRCKEKWENI NKYFKKVKES  540
NKKRPEDSKT CPYFHLLDAI YKEKSKNEAS FNPPGSALKP ENNPMVPIMV QPEQQWPLPP  600
EHHHHHHPLN DHESDNIDEE DDGDDDDDED DDEGGGGYEI VTNKPPSTAT TTATSTV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76890.2	5e-80	Trihelix family protein