PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019175328.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB_related

Protein Properties

Length: 700aa MW: 73286.7 Da PI: 5.8458

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019175328.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25.5	3e-08	203	247	1	44
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrw 44 r++W++ Ed+ l+ av++ G g+W+ I + Rt+ q+ rw XP_019175328.1 203 RKPWSEAEDLELIAAVQKCGEGNWANILKGDFkGDRTASQLSQRW 247 789************************984222488888888887 PP

Sequence ? help Back to Top
Protein Sequence Length: 700 aa Download sequence
MVEKSGKRKK CSVSEEDIST LLQRYNATTV LALLREVAQV TEVKIDWNEL VKKSSTGITN 60 AREYQMLWRH LAYRHGLADR LDDSALPLDD DSDLEYELEA SPAVSSEASA EAAACVKVFI 120 ASGVPNDSYL SNGTIVEAPL TINIPTGQTC RNPSDNCYQS ISQGTNITVP VFVQKQPLPN 180 VASAEGLDTN GASNATLPPR RKRKPWSEAE DLELIAAVQK CGEGNWANIL KGDFKGDRTA 240 SQLSQRWAII RKRQGTLVGN SSQPTEAQLA ARRAMSLALD MPMGDNLKAV CSINTAGANT 300 NISPGNPANP PAAETSFVGT QSQNHLGQQQ DSGMASQKPG TLGPSKARVP PKKPPTKTTL 360 SPDSMVKAAA VAAGARIATP SDAASLLKAA QSMNAVRIMP GGGGPMVKPP AVGANALPSN 420 VHFIRTGLLS HSKTLPNATR TGPQPVQGHS AKPASQIVQS NLSSTTISGP KASNEVPNGT 480 NSSLAAELDV KTVEDAVISG PKALAEVPNG TNSTSVSKVP NGTNSTPASE LDTKTAKDSV 540 ISGSETVMEK PAKESRAPGP CNSPEGNKAA STKEVPLELA QVDQTAIPAK EKIEETCFSG 600 DAPKENGQRD QASVSTASAA NICVQEKQIN SSSTTDVTTV KCSANDRNQA EVECASSNDN 660 SAIVSPVGNT SKEMNEKQPA NRNQIDPSSM AVDGADEEVT

Sequence ? help Back to Top

Protein Sequence Length: 700 aa Download sequence

MVEKSGKRKK CSVSEEDIST LLQRYNATTV LALLREVAQV TEVKIDWNEL VKKSSTGITN  60
AREYQMLWRH LAYRHGLADR LDDSALPLDD DSDLEYELEA SPAVSSEASA EAAACVKVFI  120
ASGVPNDSYL SNGTIVEAPL TINIPTGQTC RNPSDNCYQS ISQGTNITVP VFVQKQPLPN  180
VASAEGLDTN GASNATLPPR RKRKPWSEAE DLELIAAVQK CGEGNWANIL KGDFKGDRTA  240
SQLSQRWAII RKRQGTLVGN SSQPTEAQLA ARRAMSLALD MPMGDNLKAV CSINTAGANT  300
NISPGNPANP PAAETSFVGT QSQNHLGQQQ DSGMASQKPG TLGPSKARVP PKKPPTKTTL  360
SPDSMVKAAA VAAGARIATP SDAASLLKAA QSMNAVRIMP GGGGPMVKPP AVGANALPSN  420
VHFIRTGLLS HSKTLPNATR TGPQPVQGHS AKPASQIVQS NLSSTTISGP KASNEVPNGT  480
NSSLAAELDV KTVEDAVISG PKALAEVPNG TNSTSVSKVP NGTNSTPASE LDTKTAKDSV  540
ISGSETVMEK PAKESRAPGP CNSPEGNKAA STKEVPLELA QVDQTAIPAK EKIEETCFSG  600
DAPKENGQRD QASVSTASAA NICVQEKQIN SSSTTDVTTV KCSANDRNQA EVECASSNDN  660
SAIVSPVGNT SKEMNEKQPA NRNQIDPSSM AVDGADEEVT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	199	205	PRRKRKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09710.1	1e-69	MYB_related family protein