PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019175389.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MIKC_MADS

Protein Properties

Length: 162aa MW: 18658.4 Da PI: 9.9054

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019175389.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	92.4	2.1e-29	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien+snrqvtfskRrngi+KKA+E+SvLCda+v++i+++s+gk++ y+s XP_019175389.1 9 KRIENSSNRQVTFSKRRNGIIKKAKEISVLCDAKVSLIVYASSGKMHHYCS 59 79***********************************************96 PP
2	K-box	81.3	2.2e-27	71	153	1	83
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkk 83 yqk+sgk+l++ak+e+l++e++++kke++++ e+Rhl+Ged++sL++k+L+ Le++Le++l++iR+k+ e+++++ e++qk XP_019175389.1 71 YQKASGKKLWDAKHENLNNEIDRMKKENDSMHIELRHLKGEDINSLNYKDLRVLEDALESGLTSIRNKQFEIVKMMREQQQKE 153 899********************************************************************999888887765 PP

Sequence ? help Back to Top
Protein Sequence Length: 162 aa Download sequence
MGRGKIEIKR IENSSNRQVT FSKRRNGIIK KAKEISVLCD AKVSLIVYAS SGKMHHYCSP 60 STELVNMLDG YQKASGKKLW DAKHENLNNE IDRMKKENDS MHIELRHLKG EDINSLNYKD 120 LRVLEDALES GLTSIRNKQF EIVKMMREQQ QKEMGADRNG GY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G20240.1	6e-75	MIKC_MADS family protein