PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019175390.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MIKC_MADS

Protein Properties

Length: 160aa MW: 18402.1 Da PI: 9.9054

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019175390.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	92.5	2.1e-29	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien+snrqvtfskRrngi+KKA+E+SvLCda+v++i+++s+gk++ y+s XP_019175390.1 9 KRIENSSNRQVTFSKRRNGIIKKAKEISVLCDAKVSLIVYASSGKMHHYCS 59 79***********************************************96 PP
2	K-box	79.1	1.1e-26	71	150	1	80
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieel 80 yqk+sgk+l++ak+e+l++e++++kke++++ e+Rhl+Ged++sL++k+L+ Le++Le++l++iR+k+ e+++++ e+ XP_019175390.1 71 YQKASGKKLWDAKHENLNNEIDRMKKENDSMHIELRHLKGEDINSLNYKDLRVLEDALESGLTSIRNKQFEIVKMMREQK 150 899********************************************************************999888765 PP

Sequence ? help Back to Top
Protein Sequence Length: 160 aa Download sequence
MGRGKIEIKR IENSSNRQVT FSKRRNGIIK KAKEISVLCD AKVSLIVYAS SGKMHHYCSP 60 STELVNMLDG YQKASGKKLW DAKHENLNNE IDRMKKENDS MHIELRHLKG EDINSLNYKD 120 LRVLEDALES GLTSIRNKQF EIVKMMREQK EMGADRNGGY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G20240.1	3e-74	MIKC_MADS family protein