PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019175498.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Trihelix

Protein Properties

Length: 910aa MW: 101201 Da PI: 8.1083

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019175498.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	61.6	1.8e-19	818	898	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+ +ev++Li++r e++++++ k +++lW+e+s+++ + g++rsp qCk+ w +l ++y++ k+ +k+ ++++pyf++++ XP_019175498.1 818 KWKPEEVKKLIKMRGELNSKFQVLKGRMALWQEISSNLLSDGISRSPGQCKSLWASLVQKYEESKKDRKS-----QEKWPYFKDMN 898 7**************************************************************99998.....478****97 PP

Sequence ? help Back to Top
Protein Sequence Length: 910 aa Download sequence
MKMAVTSFTS GVSLCPYKLW YQPLLRRRFI SCSVRTPSVK DIRGAKLPRK RNVKGEGAGK 60 SMEDAVQRKM EQFYEGSDGP PLRILPIGGL GEIGMNCMLV GYYDRYILID AGVMFPGYDE 120 LGVVKIIPDT TFIEKWSHKI EAVIITHGHE DHIGALPWVI PALDSDTPIF ASSFTLELIK 180 KRLKEFSIFV PSRLKVFKTR RRFTAGPFEV EPIRVTHSIP DCCGLVLRCD AGTILHTGDW 240 KIDESPLDGN VFDREALEEL SKEGVTLMMS DSTNVLSPGR TLSETVVADS LLRHISAATG 300 RIIATQFASN IHRLGSVKAA ADLTGRKLVF VGMSLRTYLD AAWKDGKAPI DPSTLVKAED 360 IDSYAPKDLL IVTTGSQVSN IDAFYAFANC ILVYLNLLLC QAEPRAALNL ASYGSSHSLK 420 LSKDDLILYS AKVIPGNETR VMKMLNRISE IGSTVIMGKN ELLHTSGHAH REELEEVLRI 480 VKPQHFLPIH GELLFLKEHE LLGRSTGIRH STVIKNGEML GVSHLRNRRV LSNGFISLGK 540 ENLQLMYSDG DKAFGTAAEL CVDERMRIAS DGIIVISMEI LRPQPTDTLS EKAIKGKIRI 600 TTRCLWLDKG KLLDALHKAA HAALSSCPVN CPLHHMERTV SEVLRKLVRK YSSKRPEVIA 660 IATENPVSVL ADEISGKLSG KSHVGSGISV LRKAINGDQE KRWSNTIQAE EENNGPEHLM 720 NIAYEEEKGT DIDIETDTSD EETTSSSLLQ DCSNNDLPSD DFWKPFVTSS TIHPSEENGD 780 GALLQEQLHD SSVKGNNKLF SDLSKSKLKS SKSMTRNKWK PEEVKKLIKM RGELNSKFQV 840 LKGRMALWQE ISSNLLSDGI SRSPGQCKSL WASLVQKYEE SKKDRKSQEK WPYFKDMNSI 900 LSDLEAPTSK

Sequence ? help Back to Top

Protein Sequence Length: 910 aa Download sequence

MKMAVTSFTS GVSLCPYKLW YQPLLRRRFI SCSVRTPSVK DIRGAKLPRK RNVKGEGAGK  60
SMEDAVQRKM EQFYEGSDGP PLRILPIGGL GEIGMNCMLV GYYDRYILID AGVMFPGYDE  120
LGVVKIIPDT TFIEKWSHKI EAVIITHGHE DHIGALPWVI PALDSDTPIF ASSFTLELIK  180
KRLKEFSIFV PSRLKVFKTR RRFTAGPFEV EPIRVTHSIP DCCGLVLRCD AGTILHTGDW  240
KIDESPLDGN VFDREALEEL SKEGVTLMMS DSTNVLSPGR TLSETVVADS LLRHISAATG  300
RIIATQFASN IHRLGSVKAA ADLTGRKLVF VGMSLRTYLD AAWKDGKAPI DPSTLVKAED  360
IDSYAPKDLL IVTTGSQVSN IDAFYAFANC ILVYLNLLLC QAEPRAALNL ASYGSSHSLK  420
LSKDDLILYS AKVIPGNETR VMKMLNRISE IGSTVIMGKN ELLHTSGHAH REELEEVLRI  480
VKPQHFLPIH GELLFLKEHE LLGRSTGIRH STVIKNGEML GVSHLRNRRV LSNGFISLGK  540
ENLQLMYSDG DKAFGTAAEL CVDERMRIAS DGIIVISMEI LRPQPTDTLS EKAIKGKIRI  600
TTRCLWLDKG KLLDALHKAA HAALSSCPVN CPLHHMERTV SEVLRKLVRK YSSKRPEVIA  660
IATENPVSVL ADEISGKLSG KSHVGSGISV LRKAINGDQE KRWSNTIQAE EENNGPEHLM  720
NIAYEEEKGT DIDIETDTSD EETTSSSLLQ DCSNNDLPSD DFWKPFVTSS TIHPSEENGD  780
GALLQEQLHD SSVKGNNKLF SDLSKSKLKS SKSMTRNKWK PEEVKKLIKM RGELNSKFQV  840
LKGRMALWQE ISSNLLSDGI SRSPGQCKSL WASLVQKYEE SKKDRKSQEK WPYFKDMNSI  900
LSDLEAPTSK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63420.1	0.0	Trihelix family protein