PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019175517.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB_related

Protein Properties

Length: 460aa MW: 50923.5 Da PI: 6.3327

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019175517.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	20.5	1e-06	53	99	1	53
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkY 53 k+r rWt+e H+rFvea++ G A ++i e+++ k t+ +++SH Qk+ XP_019175517.1 53 KQRERWTEEEHQRFVEALKLYGR---A-WRKIEEHVGTK--TVIQIRSHAQKF 99 79****************99853...3.47899998887..788999999998 PP
2	Myb_DNA-binding	53.1	7.4e-17	55	99	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT+eE++++v+a k++G W++I +++g ++t q++s+ qk+ XP_019175517.1 55 RERWTEEEHQRFVEALKLYGRA-WRKIEEHVG-TKTVIQIRSHAQKF 99 78****************88.*****.**********98 PP

Sequence ? help Back to Top
Protein Sequence Length: 460 aa Download sequence
MVAEAMDQSD GNSGAVSSAV NSKVETMTTQ AGVSSSLGSE YLPKVRKPYT ITKQRERWTE 60 EEHQRFVEAL KLYGRAWRKI EEHVGTKTVI QIRSHAQKFF TKVVRDLGND GDGPIEIPPP 120 RPKKKPLHPY PRKMVDSSKP EMEVLGQSER SPSKMYNGER DNQSPDSVLS AIGSDDMESP 180 VAELQHTQLQ RSPASCTSDA DSPNLAPIEN DNECLTSNSS VEKKGSVASV GVTAKSSHPT 240 DNSSVKLDLL SRDTASSVKE LSRDNPGSFR LFGQTVSVSI AVADSSKQEP HNFKDAAREE 300 NDNTTVEGLP NHVNSQFVYT MVPHSMIPPA SWFPQFLPNN DSKPTTMPPW WSWHQDLMHQ 360 YFSSCSHVAA QTTYPEEDFK HPRPLRERSS TDSSSGSASE VNSVLRNCDA IESKGGTVKL 420 ENTQNRKGFV PYKKCLAERN EESSAADIEE PERKKLCVGL

Sequence ? help Back to Top

Protein Sequence Length: 460 aa Download sequence

MVAEAMDQSD GNSGAVSSAV NSKVETMTTQ AGVSSSLGSE YLPKVRKPYT ITKQRERWTE  60
EEHQRFVEAL KLYGRAWRKI EEHVGTKTVI QIRSHAQKFF TKVVRDLGND GDGPIEIPPP  120
RPKKKPLHPY PRKMVDSSKP EMEVLGQSER SPSKMYNGER DNQSPDSVLS AIGSDDMESP  180
VAELQHTQLQ RSPASCTSDA DSPNLAPIEN DNECLTSNSS VEKKGSVASV GVTAKSSHPT  240
DNSSVKLDLL SRDTASSVKE LSRDNPGSFR LFGQTVSVSI AVADSSKQEP HNFKDAAREE  300
NDNTTVEGLP NHVNSQFVYT MVPHSMIPPA SWFPQFLPNN DSKPTTMPPW WSWHQDLMHQ  360
YFSSCSHVAA QTTYPEEDFK HPRPLRERSS TDSSSGSASE VNSVLRNCDA IESKGGTVKL  420
ENTQNRKGFV PYKKCLAERN EESSAADIEE PERKKLCVGL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17300.1	5e-42	MYB_related family protein