PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019175519.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB_related

Protein Properties

Length: 434aa MW: 48356.8 Da PI: 6.7057

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019175519.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	20.7	9.3e-07	27	73	1	53
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkY 53 k+r rWt+e H+rFvea++ G A ++i e+++ k t+ +++SH Qk+ XP_019175519.1 27 KQRERWTEEEHQRFVEALKLYGR---A-WRKIEEHVGTK--TVIQIRSHAQKF 73 79****************99853...3.47899998887..788999999998 PP
2	Myb_DNA-binding	53.2	6.8e-17	29	73	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT+eE++++v+a k++G W++I +++g ++t q++s+ qk+ XP_019175519.1 29 RERWTEEEHQRFVEALKLYGRA-WRKIEEHVG-TKTVIQIRSHAQKF 73 78****************88.*****.**********98 PP

Sequence ? help Back to Top
Protein Sequence Length: 434 aa Download sequence
MTTQAGVSSS LGSEYLPKVR KPYTITKQRE RWTEEEHQRF VEALKLYGRA WRKIEEHVGT 60 KTVIQIRSHA QKFFTKVVRD LGNDGDGPIE IPPPRPKKKP LHPYPRKMVD SSKPEMEVLG 120 QSERSPSKMY NGERDNQSPD SVLSAIGSDD MESPVAELQH TQLQRSPASC TSDADSPNLA 180 PIENDNECLT SNSSVEKKGS VASVGVTAKS SHPTDNSSVK LDLLSRDTAS SVKELSRDNP 240 GSFRLFGQTV SVSIAVADSS KQEPHNFKDA AREENDNTTV EGLPNHVNSQ FVYTMVPHSM 300 IPPASWFPQF LPNNDSKPTT MPPWWSWHQD LMHQYFSSCS HVAAQTTYPE EDFKHPRPLR 360 ERSSTDSSSG SASEVNSVLR NCDAIESKGG TVKLENTQNR KGFVPYKKCL AERNEESSAA 420 DIEEPERKKL CVGL

Sequence ? help Back to Top

Protein Sequence Length: 434 aa Download sequence

MTTQAGVSSS LGSEYLPKVR KPYTITKQRE RWTEEEHQRF VEALKLYGRA WRKIEEHVGT  60
KTVIQIRSHA QKFFTKVVRD LGNDGDGPIE IPPPRPKKKP LHPYPRKMVD SSKPEMEVLG  120
QSERSPSKMY NGERDNQSPD SVLSAIGSDD MESPVAELQH TQLQRSPASC TSDADSPNLA  180
PIENDNECLT SNSSVEKKGS VASVGVTAKS SHPTDNSSVK LDLLSRDTAS SVKELSRDNP  240
GSFRLFGQTV SVSIAVADSS KQEPHNFKDA AREENDNTTV EGLPNHVNSQ FVYTMVPHSM  300
IPPASWFPQF LPNNDSKPTT MPPWWSWHQD LMHQYFSSCS HVAAQTTYPE EDFKHPRPLR  360
ERSSTDSSSG SASEVNSVLR NCDAIESKGG TVKLENTQNR KGFVPYKKCL AERNEESSAA  420
DIEEPERKKL CVGL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17300.1	6e-42	MYB_related family protein