PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019175746.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB_related
Protein Properties Length: 279aa    MW: 30314.1 Da    PI: 9.1549
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019175746.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.85.3e-13123167347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+ E+  + ++ ++lG+g+W+ I+r++  +Rt+ q+ s+ qky
   XP_019175746.1 123 PWTEKEHRNFMNGLEKLGKGDWRGISRKFVSTRTPTQVASHAQKY 167
                      8*****************************9*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    
MGRKCSKCGI TGHNSRTCTT VKGCIISNTN NNVVVGGLRL FGVQLEISSS SSLCSSPSSS  60
STNSSIAMKK SLSLDCLSSS PSSSPHSSTL VSVHENCEIK TSINGYLSDG LIGKAQEKRK  120
GVPWTEKEHR NFMNGLEKLG KGDWRGISRK FVSTRTPTQV ASHAQKYFLR LASLNHKKRR  180
ASLFDMVRSH NHKANHEDDQ ENVHSLIDLN SFGDDDQEMR VMMMTTINDD GDQVKCKTSS  240
NHHHSAEALD LGLALGAPKD VDKPKPSSTS TLLGPISVT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56840.15e-45MYB_related family protein