PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019175747.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB_related
Protein Properties Length: 274aa    MW: 29773.5 Da    PI: 9.1549
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019175747.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.67.7e-10121162647
                      HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      + E+  + ++ ++lG+g+W+ I+r++  +Rt+ q+ s+ qky
   XP_019175747.1 121 EKEHRNFMNGLEKLGKGDWRGISRKFVSTRTPTQVASHAQKY 162
                      57*************************9*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    
MGRKCSKCGI TGHNSRTCTT VKGCIISNTN NNVVVGGLRL FGVQLEISSS SSLCSSPSSS  60
STNSSIAMKK SLSLDCLSSS PSSSPHSSTL VSVHENCEIK TSINGYLSDG LIGKAQEKRK  120
EKEHRNFMNG LEKLGKGDWR GISRKFVSTR TPTQVASHAQ KYFLRLASLN HKKRRASLFD  180
MVRSHNHKAN HEDDQENVHS LIDLNSFGDD DQEMRVMMMT TINDDGDQVK CKTSSNHHHS  240
AEALDLGLAL GAPKDVDKPK PSSTSTLLGP ISVT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56840.19e-38MYB_related family protein