PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019175770.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family B3
Protein Properties Length: 245aa    MW: 27370.5 Da    PI: 8.5853
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019175770.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.92.1e-14102189197
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     ffkv+     + + rl lp   +++ g+kk+e  + +l+  ++ s++vk+  ++k++r  +tkGW +Fv +ng+  gDf vF+++g  +f++ v 
  XP_019175770.1 102 FFKVM---RRGFHTRLNLPPIMCKKLGEKKAE--EAVLTG-QNGSFKVKI-QEGKDQRLCFTKGWDDFVGQNGISRGDFAVFEHMG--SFHFSVV 187
                     66666...4566778***********988776..577666.6679*****.5888899*************************887..6655666 PP

                     EE CS
              B3  96 vf 97 
                     +f
  XP_019175770.1 188 LF 189
                     66 PP
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    
MAEPSPVAIS MEGDRWAPSL NEKSMEGDQS PSAGEATVLL EITSTVSNFC SLNRLLDRFP  60
AILKRSVPVE ETPAAGTSRK QLVTPKFLSS GMEHNLPIGW RFFKVMRRGF HTRLNLPPIM  120
CKKLGEKKAE EAVLTGQNGS FKVKIQEGKD QRLCFTKGWD DFVGQNGISR GDFAVFEHMG  180
SFHFSVVLFD LTCCQKDVHV NPETTSNDRG KNLCTGQENS SCFTTTIKAY NLRRCPYMVR  240
LLLIV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.15e-11B3 family protein