PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019175836.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family FAR1
Protein Properties Length: 215aa    MW: 24739 Da    PI: 9.3986
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019175836.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR125.34.8e-081831290
            FAR1 12 FsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCka..klkvkkekdgkwevtkleleHnHela 90
                    F+vr+s+ kk+k n  i ++++vCs+eg+++ +k++   t+  +r++++++       k  v++++ g++ vt++e+ H H l+
  XP_019175836.1  1 FDVRRSSDKKNKYNI-ILRKKLVCSREGYKAGKKSDppeTVIGKRPNVVSHLTSPVhgKDCVQNRRCGRYLVTTFEEGHAHCLC 83
                    899999999996666.***************999999986666666666666554400445788889**************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    
FDVRRSSDKK NKYNIILRKK LVCSREGYKA GKKSDPPETV IGKRPNVVSH LTSPVHGKDC  60
VQNRRCGRYL VTTFEEGHAH CLCNDSYKPF LKVNRKLDVG HQQFITNCAK VNVGSSKSFE  120
IYAEVVGGTE NVGATQQDFK NYRREVLAYM HGGDCQMVIS KYLDIKADYP DMYFEYEANH  180
NDQLIRIFWS DGVARKHYSA FRDVVSFDAT YKTNR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.14e-19FAR1 family protein