PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019175845.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 801aa MW: 91021.5 Da PI: 7.1975

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019175845.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	64.2	3.6e-20	104	190	3	91
FAR1 3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 Yn+YA ++GFs rk k+++ + ++ +++ f+Csk+g+r ++ ++ ++ +tr gC+a+ + +++gkw+vtk ++eHnHel+p XP_019175845.1 104 YNDYAFRMGFSSRKGKQYYVTGTRILKTKVFCCSKSGFRIIPDNP--NKCYSKIVTRSGCNAMCQFDIDSNGKWVVTKHVKEHNHELCP 190 9*****************9999************99988..88999*********************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 801 aa Download sequence
MNEIVVTNRI EEIDSNSMIV DENNSVFAGR DHIPVAGECI SPIAFDVPCI NFIDDNEYIP 60 DDFDNSIAVD GTSGHVIVEE SAIPDNEELL GLSVGSIEDA FGKYNDYAFR MGFSSRKGKQ 120 YYVTGTRILK TKVFCCSKSG FRIIPDNPNK CYSKIVTRSG CNAMCQFDID SNGKWVVTKH 180 VKEHNHELCP ASSSYMLRSH RKVSENQLTC LKNMKRSGVP LSDGIRFLKC QSGGSPFVGF 240 TPRDAYNMIS SDSAKHLDDT DSNSLIEIFR RRQMDESDFY FEFELDEDAR LCNFFWRDGQ 300 MKADYDLFGD LVVHDTTYRT NRYDMICAPF VGMNHHCMNV MFGCGFLLNE RIESFVWLFK 360 VFVRSMGGKH PQTIMTDQCA TMAAGIAQVF SNSNHRLCIW HIGENSKKHI KSLRNKKGFL 420 ELFNFLLKYT DTEAEFEFYW TRMMTEYGCH KNVWLNKLYS IREKWCPAFS KEYFSGGILS 480 SQRSESTNHS ISRRLSKTAG LCDFYNSFVS VVSEWRSREN GENVRCSQGL APMVMNHVKL 540 LSHARDIYII EIYYLFEEQF LKGTSCHQES VGGSGNEIKY HVWRPDVDLI RHEVCFKVND 600 LDISCSCMLF SEMGILCSHS LRIFNVHCVA AIPDKYIIKR WTKKGIEDRI ISSDSSLNIL 660 SIASSVWVIQ MGRKFQQLVL SSQANCKARE VCENAFEDAR RKVEGDIGPI VIEDGEEQIA 720 GVIQNPARNR AKGERNRRHI STIEKKYNQV RGRKLGVKVA ELSIKAAVQT SVEGIVANIV 780 GSGYFVHPSS GSHELGLVKS S

Sequence ? help Back to Top

Protein Sequence Length: 801 aa Download sequence

MNEIVVTNRI EEIDSNSMIV DENNSVFAGR DHIPVAGECI SPIAFDVPCI NFIDDNEYIP  60
DDFDNSIAVD GTSGHVIVEE SAIPDNEELL GLSVGSIEDA FGKYNDYAFR MGFSSRKGKQ  120
YYVTGTRILK TKVFCCSKSG FRIIPDNPNK CYSKIVTRSG CNAMCQFDID SNGKWVVTKH  180
VKEHNHELCP ASSSYMLRSH RKVSENQLTC LKNMKRSGVP LSDGIRFLKC QSGGSPFVGF  240
TPRDAYNMIS SDSAKHLDDT DSNSLIEIFR RRQMDESDFY FEFELDEDAR LCNFFWRDGQ  300
MKADYDLFGD LVVHDTTYRT NRYDMICAPF VGMNHHCMNV MFGCGFLLNE RIESFVWLFK  360
VFVRSMGGKH PQTIMTDQCA TMAAGIAQVF SNSNHRLCIW HIGENSKKHI KSLRNKKGFL  420
ELFNFLLKYT DTEAEFEFYW TRMMTEYGCH KNVWLNKLYS IREKWCPAFS KEYFSGGILS  480
SQRSESTNHS ISRRLSKTAG LCDFYNSFVS VVSEWRSREN GENVRCSQGL APMVMNHVKL  540
LSHARDIYII EIYYLFEEQF LKGTSCHQES VGGSGNEIKY HVWRPDVDLI RHEVCFKVND  600
LDISCSCMLF SEMGILCSHS LRIFNVHCVA AIPDKYIIKR WTKKGIEDRI ISSDSSLNIL  660
SIASSVWVIQ MGRKFQQLVL SSQANCKARE VCENAFEDAR RKVEGDIGPI VIEDGEEQIA  720
GVIQNPARNR AKGERNRRHI STIEKKYNQV RGRKLGVKVA ELSIKAAVQT SVEGIVANIV  780
GSGYFVHPSS GSHELGLVKS S

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	728	738	RNRAKGERNRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-84	FAR1 family protein