PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019175886.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C2H2

Protein Properties

Length: 275aa MW: 29862.5 Da PI: 7.8197

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019175886.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.6	0.00019	88	110	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ Cg++F++ L H +H XP_019175886.1 88 YECKTCGRTFPTFQALGGHRTSH 110 99**********99998888777 PP
2	zf-C2H2	14.7	8.6e-05	168	190	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg Fs+ L H+r+H XP_019175886.1 168 HECSYCGAEFSSGQALGGHMRRH 190 78********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence
MITDTTPPHS SATSEPIPAA PTPEDEDMAR CLMLISQGGG VSRHPPAIPK SPLYKEESGS 60 GSKFCSKKYI ETTTVGGGGG VKVGMYVYEC KTCGRTFPTF QALGGHRTSH TKEKPPLTTV 120 ETAAVKRPLS LYDEEDINPY PFNKTPKISP PFSSLHFYDS AKSSPRIHEC SYCGAEFSSG 180 QALGGHMRRH RNSTAAAAAS QLSPSSSSFE KRVLQKEENN GKGLNLDLNL LPAGEDNQDH 240 RRARELPENQ EQQPPQVQPT LFLSTTPPLV GCKYI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04390.1	2e-32	C2H2 family protein