PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019175979.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Trihelix

Protein Properties

Length: 307aa MW: 34537.8 Da PI: 5.3525

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019175979.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	50.8	4.4e-16	27	118	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 +W+++ + +L++a ++ +l+rg+l+ ++W+ev++++ + ++ +r+ +qCk++++ l+k+yk +k+ + + st+p+f++l+a XP_019175979.1 27 CWSEEATSTLVDAWGRRYLELNRGNLRHKDWQEVADAVnslhgHTKKGHRTDVQCKNRIDTLKKKYKTEKAKIAESNGALASTWPFFSRLDA 118 7************************************999988899*******************99999888888*****985 PP

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence
MGEMMDSFAP QSAAAPASRP LPFREDCWSE EATSTLVDAW GRRYLELNRG NLRHKDWQEV 60 ADAVNSLHGH TKKGHRTDVQ CKNRIDTLKK KYKTEKAKIA ESNGALASTW PFFSRLDALI 120 GNSGKNQFPK ASPAAVSPSP SPSPLPSYSP LSLPSPPMGV PLPFRRPPPV AQQVILPQKR 180 PPPAMDDSYF KKNYSAVAAA AAATDDDEAD EDEEEEGRGD SEEEMETSDE ITEEEGIRRL 240 AKAIKRFGEI YERVEGMKQR QMIELEKQRM QFAKDLEVQR MQLYMDTQVQ LEKIKQSKRS 300 GSDDMYS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58630.1	3e-34	Trihelix family protein