PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019176036.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB

Protein Properties

Length: 326aa MW: 36853.3 Da PI: 6.7108

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019176036.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	59.6	6.9e-19	15	62	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEd++l+d+++++G g+W+t + g+ R++k+c++rw +yl XP_019176036.1 15 RGPWTAEEDQKLIDYINKHGYGNWRTLPTNAGLQRCGKSCRLRWMNYL 62 89********************************************97 PP
2	Myb_DNA-binding	53.2	7e-17	68	112	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rgr++ eE++++++++ G++ W++Ia++++ gRt++++k++w+++ XP_019176036.1 68 RGRFSLEEEQIIIQLHSIIGNK-WSAIAARLP-GRTDNEIKNYWNTH 112 89******************.*****.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence
MGRTPCCSDK DGLKRGPWTA EEDQKLIDYI NKHGYGNWRT LPTNAGLQRC GKSCRLRWMN 60 YLRPDIKRGR FSLEEEQIII QLHSIIGNKW SAIAARLPGR TDNEIKNYWN THIRKKLLRM 120 GIDPVTHRRR VDLLDLSSIL NNNPSLLYNS RILGAQTFAN PHLLRLAASQ HHNNNVINSD 180 TANNVVQDTQ QLHAPPPPPL VQDFPVYSPA MAAAQLTQQP NGEFGLENCP ANDFWLGTGL 240 PESELTQDYL LPPLQNYGYY EPAVDPQSAM DPPAPAADES YRFGFRQGWS TPSSSQVNSS 300 STTTTEDERE ISYCSNLWNF DVANIF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G05100.1	9e-86	MYB family protein