PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019176188.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family M-type_MADS
Protein Properties Length: 159aa    MW: 18178.1 Da    PI: 9.4085
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019176188.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF22.91.1e-071552542
                    SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
          SRF-TF  5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                    nk++r+ ++ k ++ +l   +ELS+LC++e+  i++s 
  XP_019176188.1 15 NKTQRKSSYEKQKKSMLNMLNELSILCGVEAGAILYSR 52
                    9*******************************999995 PP
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    
MRRIGRRVRL GFMVNKTQRK SSYEKQKKSM LNMLNELSIL CGVEAGAILY SRFEEGPVVW  60
PSVEDMEESI GRFLEKRFEK LGTQLLNLKR VNRETEMGLA MYQILQGYQL NNSLSFIDLN  120
DLGWVINTYL AEIDNKVKVE AIINNSSIIL ASSALAPTQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31630.11e-21M-type_MADS family protein