PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019176266.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

E2F/DP

Protein Properties

Length: 479aa MW: 52358 Da PI: 4.8124

Description

E2F/DP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019176266.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	E2F_TDP	86.7	1.7e-27	155	220	1	71
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 r+++sL+llt+kf++l++++e+g+++ln++a++L +v ++RRiYDi+NVLe+++liekk kn+i+wkg XP_019176266.1 155 RYDSSLGLLTKKFINLIKHAEDGMIDLNNAADAL---EV--QKRRIYDITNVLEGIGLIEKKLKNRIQWKG 220 6899****************************...99..**************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 479 aa Download sequence
MSGTPTRAVA PPPSPSSNAP PSNGVSGVQI PRPTRRHLAF ASMKPPFVPP EDYHRFSTPG 60 ADVGLAAGIN HQPEAIIVKS PPLKRKGRAA SCEAEPSEWS ASPGYTDMVN SPLQTPVKGG 120 KAYGRPKTTK SNRSGPPTPV SNAGCPSPLT PVGCRYDSSL GLLTKKFINL IKHAEDGMID 180 LNNAADALEV QKRRIYDITN VLEGIGLIEK KLKNRIQWKG VDASRPGDVD TDATILRAEV 240 ENLTMEEQRL DGRIREMQEK LRGLSEDEND KRWLFVTEED IKSLPCFQNE TLIAIKAPHG 300 TTLEVPEPDE AVDYPQRRYR IILRSTMGPI DVYLVSQFEE KFEEMTGVEP SMTVPLASSS 360 GSNENPSKDR STVINSLPDN GSLAHNDSQM SCDLGASLEF NGGMMKIVPS DADNDTDYWL 420 QSDPIPGLSL TEMWKTDGDI EWCMENMLNE FGISEISTPR PQTPSAVADV PPAVNMPPR

Sequence ? help Back to Top

Protein Sequence Length: 479 aa Download sequence

MSGTPTRAVA PPPSPSSNAP PSNGVSGVQI PRPTRRHLAF ASMKPPFVPP EDYHRFSTPG  60
ADVGLAAGIN HQPEAIIVKS PPLKRKGRAA SCEAEPSEWS ASPGYTDMVN SPLQTPVKGG  120
KAYGRPKTTK SNRSGPPTPV SNAGCPSPLT PVGCRYDSSL GLLTKKFINL IKHAEDGMID  180
LNNAADALEV QKRRIYDITN VLEGIGLIEK KLKNRIQWKG VDASRPGDVD TDATILRAEV  240
ENLTMEEQRL DGRIREMQEK LRGLSEDEND KRWLFVTEED IKSLPCFQNE TLIAIKAPHG  300
TTLEVPEPDE AVDYPQRRYR IILRSTMGPI DVYLVSQFEE KFEEMTGVEP SMTVPLASSS  360
GSNENPSKDR STVINSLPDN GSLAHNDSQM SCDLGASLEF NGGMMKIVPS DADNDTDYWL  420
QSDPIPGLSL TEMWKTDGDI EWCMENMLNE FGISEISTPR PQTPSAVADV PPAVNMPPR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36010.1	1e-159	E2F/DP family protein