PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019176345.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB

Protein Properties

Length: 245aa MW: 27595.9 Da PI: 6.9225

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019176345.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.8	5e-18	12	59	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+ll d+v ++G g+W+ +ar+ g++R +k+c++rw +yl XP_019176345.1 12 KGPWTPEEDKLLGDYVSLHGEGRWSCVARCAGLNRNGKSCRLRWVNYL 59 79********************************************97 PP
2	Myb_DNA-binding	51.4	2.4e-16	65	109	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg T++E+ +++++++++G++ W+tIar+++ gRt++++k++w+++ XP_019176345.1 65 RGHITPQEEGIIIELHALWGNK-WSTIARYLP-GRTDNEIKNYWRTH 109 6778****************.*****.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence
MVGAGAKAGW RKGPWTPEED KLLGDYVSLH GEGRWSCVAR CAGLNRNGKS CRLRWVNYLR 60 PGLKRGHITP QEEGIIIELH ALWGNKWSTI ARYLPGRTDN EIKNYWRTHF KKKPATGKTG 120 SEKQDRRKKL RKINEEQEND TKPQETMTND SSCITAATAA PMDCVCVEDN NHLGGTSANT 180 TTTLYHQNID DIESWVDSFA MDGLWGGELW NLDDDYCLHD PAVIQNPCGY GTDHAVNLWN 240 GGFIF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	111	129	KKKPATGKTGSEKQDRRKK
2	112	128	KKPATGKTGSEKQDRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G30210.1	5e-73	MYB family protein