PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019176350.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family B3
Protein Properties Length: 267aa    MW: 30041 Da    PI: 9.1886
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019176350.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.51e-1713105199
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvv 94 
                     ffk+l+ sd  +   l+lp  f  ++ g+k +s+    +  s +sW+vkl  +k+s+ry++++GW+ Fv++n+L+ g fvvF l+++ s+f  +v
  XP_019176350.1  13 FFKILSASDFAS--VLRLPPLFG-KIFGEKLSSTPSLAMAGSWKSWTVKL--KKSSNRYLFADGWSVFVNDNQLEIGNFVVFWLMDNySTF--HV 100
                     899996666555..499*****9.6645555554445555677*******..*********************************998999..99 PP

                     EEE-S CS
              B3  95 kvfrk 99 
                     +++++
  XP_019176350.1 101 QLYDR 105
                     99887 PP
2B349.67.3e-16166244990
                     HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
              B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                     ++++   +++pk f+ee g+   +++ +tl d +g++We+k+  +k++g+ ++ ++ W +F  an+L  g +++F+l+g++++
  XP_019176350.1 166 SASTDEEMIIPKGFVEETGIA--GKRNITLLDARGEKWEIKI--SKQDGEfVMCGGRWADFRIANRLSKGYVCTFELVGSHGG 244
                     45566679*********9866..5668***************..9999885666777********************998666 PP
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    
MSNFNMQNEN PSFFKILSAS DFASVLRLPP LFGKIFGEKL SSTPSLAMAG SWKSWTVKLK  60
KSSNRYLFAD GWSVFVNDNQ LEIGNFVVFW LMDNYSTFHV QLYDRTCCDK SLSSSRFFPG  120
FSGENSSNLG QTMSVKKESE TEDDKSQISI GPSKTTTNPS FVTILSASTD EEMIIPKGFV  180
EETGIAGKRN ITLLDARGEK WEIKISKQDG EFVMCGGRWA DFRIANRLSK GYVCTFELVG  240
SHGGHHQLQF HLEKRARGRP LGRHSRQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31640.12e-17B3 family protein