PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019176391.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

CO-like

Protein Properties

Length: 403aa MW: 44565.2 Da PI: 5.5409

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019176391.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	29.9	1.2e-09	68	113	3	42
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++ C+ +++ ++ ++C+ + lC+ C +H H +vp+ XP_019176391.1 68 MWLCDSCQRAPAVFWCNADAASLCAACDADIHAAnplarrHHRVPI 113 689*****************************66788888877775 PP
2	CCT	67.5	3.6e-23	334	377	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eK+k+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++ XP_019176391.1 334 REARVLRYREKKKSRKFEKTIRYASRKAYAETRPRLKGRFTKRT 377 9****************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 403 aa Download sequence
MSKEESSCGD LDFGGSSNTK SHNWASVCHT CHSVPCSINC RTNSAYLSAS SQGCMHATNR 60 ETSIHEHMWL CDSCQRAPAV FWCNADAASL CAACDADIHA ANPLARRHHR VPILPLLGTI 120 HGGPPDTDPG GGGPLMITHA GDTTEDDGFM RDAEETTLDE EDEDEAASWL LLNLTPAKNN 180 SSSQGGNNST DMLYGCKVED EYLDLVEYSS CQHNQYSDQY SINHQQQYSV PQKKIKYEGD 240 CVVPGKGKNQ LQYQQQYHQH GSFQFLGVEY ENSNTGYPAS ISQSVSISSF DVGVVPESTI 300 TDASFAYSRP SKGTIDLLSG PPAQMPSQLT PMDREARVLR YREKKKSRKF EKTIRYASRK 360 AYAETRPRLK GRFTKRTDVE TEEDQIFSTA LMAEGGYGIV PYF

Sequence ? help Back to Top

Protein Sequence Length: 403 aa Download sequence

MSKEESSCGD LDFGGSSNTK SHNWASVCHT CHSVPCSINC RTNSAYLSAS SQGCMHATNR  60
ETSIHEHMWL CDSCQRAPAV FWCNADAASL CAACDADIHA ANPLARRHHR VPILPLLGTI  120
HGGPPDTDPG GGGPLMITHA GDTTEDDGFM RDAEETTLDE EDEDEAASWL LLNLTPAKNN  180
SSSQGGNNST DMLYGCKVED EYLDLVEYSS CQHNQYSDQY SINHQQQYSV PQKKIKYEGD  240
CVVPGKGKNQ LQYQQQYHQH GSFQFLGVEY ENSNTGYPAS ISQSVSISSF DVGVVPESTI  300
TDASFAYSRP SKGTIDLLSG PPAQMPSQLT PMDREARVLR YREKKKSRKF EKTIRYASRK  360
AYAETRPRLK GRFTKRTDVE TEEDQIFSTA LMAEGGYGIV PYF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02380.1	2e-81	CO-like family protein