PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019176452.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 236aa    MW: 26059.3 Da    PI: 6.5102
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019176452.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.000132951123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C+ C++ Fs++  L  H++ H
  XP_019176452.1 29 FSCNFCKREFSTSQALGGHQNAH 51
                    89******************988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    
MTTSSPPPSN SSNEGESAER RDFESQRIFS CNFCKREFST SQALGGHQNA HKQERALAKR  60
RQGLLDTVAP YVSPHYHPYY HPYSAFSSHL PFYNSFGNRS LGVVPNYSSA IHRLPSSYHH  120
PSFLVAENSN YSRFGGEKWS PTPRSLLTRP PESVQGNNGG SAFGTTGFVA NSFKLEINKG  180
QLGSVIKVDD NHTSADDSKN EGKNNSLLGD DEDKGQDQDQ NQVEEDDSGI DLSLKL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01860.18e-17C2H2 family protein