PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019176456.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 732aa MW: 85261 Da PI: 8.6878

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019176456.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	71.9	1.4e-22	35	127	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY +YAke+GF+vr +++++ r+ge+ +++ Cs+eg+++e k+ +e++rr+r+++r+gCka+++++k+++g ++v+ +el H+H l+ XP_019176456.1 35 DFYVDYAKEAGFDVRHGTKRRN-RKGEVSIKHLLCSREGYKAEPKEPqnstKERKRRRRTSNRIGCKARMVMTKRDKGGYKVHAIELRHTHCLC 127 6***************9998.7778*********99988777888899999********************************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 732 aa Download sequence
MGIHEDGAKY WKPTTQNEKT PYEGQQFDTV DTGIDFYVDY AKEAGFDVRH GTKRRNRKGE 60 VSIKHLLCSR EGYKAEPKEP QNSTKERKRR RRTSNRIGCK ARMVMTKRDK GGYKVHAIEL 120 RHTHCLCSDA GKPFLKINRQ LDIGHKIFLA HCAKANIGPT KAFRLFKEMV GSFTDIGATC 180 IEFCNFRRDL LAYIAETDAQ MVIEDMFKRK EDNPDFYFDF DIDEDAQLTR LFWADAQSRR 240 NYACFGDVVS FNATYSTNRY ISLFLYIEYN RYCVCTQCNK GVDNHKRCIT FGAGLIAKED 300 VESYEWLLTK FNTAMEYAPR CTTTDQDPAL KIVVPQTMPT TRHRFCMWHI MTKVGEKVGV 360 ALWHNQDFKK ALNSTVWDDT LTTDEFKRKW ETIMKDYNLK DHRWFTQLYE ARASWIPAYF 420 NDILMAGLLR TTSRSESENS YFGKFTNHHC SLVEFIAQYN NAIGEQRHKQ ARLIAENEGS 480 YLETKTPLSI EKHATTVYTI NIFYEFQEEA WEASFTCDII DKHNIGDIWK YTIKDTNGKM 540 YEVTETPQER EIECECKMFN RVGILCRHVL LVMKTKGYES IPEKYIVPRW TRNACAHPLY 600 DVPWARKTNI TKTNETTKVA NQLWNEFYNC MGLVNGWPDK MDQMLATLQQ LKKDLQKEAQ 660 QTQEGAHTES VFEKLVGSSR PSDIQIKPPQ VAKNKGSGKR LKSSKEIATT KNQKKKERTC 720 RQTCISESLK DF

Sequence ? help Back to Top

Protein Sequence Length: 732 aa Download sequence

MGIHEDGAKY WKPTTQNEKT PYEGQQFDTV DTGIDFYVDY AKEAGFDVRH GTKRRNRKGE  60
VSIKHLLCSR EGYKAEPKEP QNSTKERKRR RRTSNRIGCK ARMVMTKRDK GGYKVHAIEL  120
RHTHCLCSDA GKPFLKINRQ LDIGHKIFLA HCAKANIGPT KAFRLFKEMV GSFTDIGATC  180
IEFCNFRRDL LAYIAETDAQ MVIEDMFKRK EDNPDFYFDF DIDEDAQLTR LFWADAQSRR  240
NYACFGDVVS FNATYSTNRY ISLFLYIEYN RYCVCTQCNK GVDNHKRCIT FGAGLIAKED  300
VESYEWLLTK FNTAMEYAPR CTTTDQDPAL KIVVPQTMPT TRHRFCMWHI MTKVGEKVGV  360
ALWHNQDFKK ALNSTVWDDT LTTDEFKRKW ETIMKDYNLK DHRWFTQLYE ARASWIPAYF  420
NDILMAGLLR TTSRSESENS YFGKFTNHHC SLVEFIAQYN NAIGEQRHKQ ARLIAENEGS  480
YLETKTPLSI EKHATTVYTI NIFYEFQEEA WEASFTCDII DKHNIGDIWK YTIKDTNGKM  540
YEVTETPQER EIECECKMFN RVGILCRHVL LVMKTKGYES IPEKYIVPRW TRNACAHPLY  600
DVPWARKTNI TKTNETTKVA NQLWNEFYNC MGLVNGWPDK MDQMLATLQQ LKKDLQKEAQ  660
QTQEGAHTES VFEKLVGSSR PSDIQIKPPQ VAKNKGSGKR LKSSKEIATT KNQKKKERTC  720
RQTCISESLK DF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	87	91	RKRRR
2	87	93	RKRRRRT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	8e-81	FAR1 family protein