PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019176479.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 558aa MW: 63100.8 Da PI: 9.6231

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019176479.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	68	2.3e-21	8	95	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 Yn YA++vGFsvrk +++++ +++i +++f C k g++++ ++ + ++ rtgC a ++ dg w vtk +eHnHel++ XP_019176479.1 8 LYNGYAYRVGFSVRKGQQRYKASTKSIQMKRFFCAKAGYKQKPNSG--VKLYSKIDMRTGCGAFVQFDVGGDGMWTVTKHLKEHNHELCS 95 7**************************************99887..888999********************************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 558 aa Download sequence
MLTKLFELYN GYAYRVGFSV RKGQQRYKAS TKSIQMKRFF CAKAGYKQKP NSGVKLYSKI 60 DMRTGCGAFV QFDVGGDGMW TVTKHLKEHN HELCSFGKSH LLRSHRRVGN NQLEYLKDMK 120 SSGVALADGM RFLKHQSGGS PLVGFTNRDA YNSMASVSLK CLDGSDSNSL VEIFRRRQSN 180 EADFFFDFES VLRSMDGKCP QTIMTDQCSA MAAGISMVFP TSRHRLCIWH IGENSKKHIK 240 ALRNHKDFLD MFNCVLKYTE TEAEFEVYWT RMVTKYNCHK NTWLEKLYDC REKWCPAFNK 300 DYFSGGILSS QRSESTNHAI SRRLSKTAGL CDFYSSFVSV ISEWRSKENG EDFRCKLFSE 360 LGILCCHCLR ILHVHCVSSI PDKYILKRWT KKAVERTNVD IASVFYNGGV PSSIWAVEIS 420 RKFQRLIVSS QDNSVARQLC DEAVENARKN IEAEIGDVNT EEGAVSSSSG IVQDPSSRRG 480 KGVRNKRSSS VIEKKYNAAR GRKSAANKLA SITKGSVQSL VLENISEIAR DGYLVHPSTG 540 GSQFVHFNKN VDHDVAID

Sequence ? help Back to Top

Protein Sequence Length: 558 aa Download sequence

MLTKLFELYN GYAYRVGFSV RKGQQRYKAS TKSIQMKRFF CAKAGYKQKP NSGVKLYSKI  60
DMRTGCGAFV QFDVGGDGMW TVTKHLKEHN HELCSFGKSH LLRSHRRVGN NQLEYLKDMK  120
SSGVALADGM RFLKHQSGGS PLVGFTNRDA YNSMASVSLK CLDGSDSNSL VEIFRRRQSN  180
EADFFFDFES VLRSMDGKCP QTIMTDQCSA MAAGISMVFP TSRHRLCIWH IGENSKKHIK  240
ALRNHKDFLD MFNCVLKYTE TEAEFEVYWT RMVTKYNCHK NTWLEKLYDC REKWCPAFNK  300
DYFSGGILSS QRSESTNHAI SRRLSKTAGL CDFYSSFVSV ISEWRSKENG EDFRCKLFSE  360
LGILCCHCLR ILHVHCVSSI PDKYILKRWT KKAVERTNVD IASVFYNGGV PSSIWAVEIS  420
RKFQRLIVSS QDNSVARQLC DEAVENARKN IEAEIGDVNT EEGAVSSSSG IVQDPSSRRG  480
KGVRNKRSSS VIEKKYNAAR GRKSAANKLA SITKGSVQSL VLENISEIAR DGYLVHPSTG  540
GSQFVHFNKN VDHDVAID

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G19990.1	1e-27	FAR1 family protein