PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019176578.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family Trihelix
Protein Properties Length: 307aa    MW: 34588.6 Da    PI: 4.4364
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019176578.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix33.41.2e-101684270
        trihelix  2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekk 70
                    Wt qe l+L++  + +e + +++ +  ++W+   +++ +  + rs  qCk kwe+l  +y+++k +e k
  XP_019176578.1 16 WTLQESLTLVNEIKAVEAEAGATMSSFQKWQLTVEHCNALDVCRSMDQCKRKWESLLDDYRRVKPWEAK 84
                    ******************************************************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    
MERGSRRTRS QAAPDWTLQE SLTLVNEIKA VEAEAGATMS SFQKWQLTVE HCNALDVCRS  60
MDQCKRKWES LLDDYRRVKP WEAKYWTASF GDSRRKELGL PEGFDLELFE AVDAYVKMQG  120
MDAGGADTDP DQDSDPEAQP DDSLIFLERG SKKQRRRSNT RKRRAEESLH SWRYALSGSV  180
KQEQPSLGEK VEPPKVQHSA MEIEGEPSGL GDKVEEPPEN KEGDNIMAEP SIGEDKQEMM  240
ALTLQKNAEL INAVLEGNFA EDGDDDMMNS VPDPTDLARL QADKLIKYLG KISETLGQLC  300
EIVQECK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31270.15e-52Trihelix family protein