PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019176688.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

ARR-B

Protein Properties

Length: 549aa MW: 61338.8 Da PI: 5.4072

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019176688.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	79	5.9e-25	198	251	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++Wt eLH++Fv+av+q+ G +k Pk+il+lm+v+ Lt+e+v+SHLQkYRl XP_019176688.1 198 KPRVVWTVELHQKFVKAVNQI-GFDKVGPKKILDLMGVPWLTRENVASHLQKYRL 251 79*****************.9*****************************8 PP
2	Myb_DNA-binding	43.3	8.7e-14	200	250	1	48
TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 r WT e+++++v+av+q G + +k+I mg +t++++ s++qky+ XP_019176688.1 200 RVVWTVELHQKFVKAVNQIGFDkvGPKKILDLMGvPWLTRENVASHLQKYR 250 678***********************************************7 PP
3	Response_reg	79.9	8.3e-27	24	132	1	109
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 vl+vdD+p+ +++l+++l+k y ev+++ ++ea+ ll+e++ +D+++ D++mp+mdG++ll+ e++lp+i+++ ge + + + ++ G XP_019176688.1 24 VLVVDDDPTWLKILEKMLKKCSY-EVTTCGLATEAIGLLRERRngFDIVISDVNMPDMDGFKLLELVGL-EMDLPVIMMSVDGETSRVMKGVQHG 116 89*******************.***********999999***************87754.558****************** PP ESEEEESS--HHHHHH CS Response_reg 94 akdflsKpfdpeelvk 109 a d+l Kp+ ++el++ XP_019176688.1 117 ACDYLLKPIRMKELRN 132 ***********987 PP

Sequence ? help Back to Top
Protein Sequence Length: 549 aa Download sequence
MESVMAGGIF LPRSSETFPA GLRVLVVDDD PTWLKILEKM LKKCSYEVTT CGLATEAIGL 60 LRERRNGFDI VISDVNMPDM DGFKLLELVG LEMDLPVIMM SVDGETSRVM KGVQHGACDY 120 LLKPIRMKEL RNIWQHVVRK RMQESRDIDN HESDQFDEAW MLNGIELQSG KKRKDFDYKF 180 DERETSDSKS GDPSSAKKPR VVWTVELHQK FVKAVNQIGF DKVGPKKILD LMGVPWLTRE 240 NVASHLQKYR LYLTRLQKEN ELKASSSGTK HPDLSPKESS SSACLQNLVD VKPSKSTNGK 300 YSFPGENFFV QEVESRNYEG EVKAAASLST AGVSDSQKSI SCSKASCVPV DSVDLEHAGE 360 IPIQYCWASE VSKTGFKHEF KPPQIQTEDN VNHLPSPKLP QHVQLDQAQP LLNLAPHKDI 420 NPGEIKSKPT KTPGVRTVSP LECAVDLLPA QPQSCLTNFQ AFEQIPSTTW SMKIPESIEG 480 NLFLGGGSWD KDFNAAALQG EFHSPCVVGP QSLELLDYSN TNLTGEIQPY LYDYEYAIDP 540 VIDHGLFIL

Sequence ? help Back to Top

Protein Sequence Length: 549 aa Download sequence

MESVMAGGIF LPRSSETFPA GLRVLVVDDD PTWLKILEKM LKKCSYEVTT CGLATEAIGL  60
LRERRNGFDI VISDVNMPDM DGFKLLELVG LEMDLPVIMM SVDGETSRVM KGVQHGACDY  120
LLKPIRMKEL RNIWQHVVRK RMQESRDIDN HESDQFDEAW MLNGIELQSG KKRKDFDYKF  180
DERETSDSKS GDPSSAKKPR VVWTVELHQK FVKAVNQIGF DKVGPKKILD LMGVPWLTRE  240
NVASHLQKYR LYLTRLQKEN ELKASSSGTK HPDLSPKESS SSACLQNLVD VKPSKSTNGK  300
YSFPGENFFV QEVESRNYEG EVKAAASLST AGVSDSQKSI SCSKASCVPV DSVDLEHAGE  360
IPIQYCWASE VSKTGFKHEF KPPQIQTEDN VNHLPSPKLP QHVQLDQAQP LLNLAPHKDI  420
NPGEIKSKPT KTPGVRTVSP LECAVDLLPA QPQSCLTNFQ AFEQIPSTTW SMKIPESIEG  480
NLFLGGGSWD KDFNAAALQG EFHSPCVVGP QSLELLDYSN TNLTGEIQPY LYDYEYAIDP  540
VIDHGLFIL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67710.1	1e-126	ARR-B family protein