PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019176691.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

ARR-B

Protein Properties

Length: 473aa MW: 52939 Da PI: 5.6288

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019176691.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	79.2	4.8e-25	122	175	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++Wt eLH++Fv+av+q+ G +k Pk+il+lm+v+ Lt+e+v+SHLQkYRl XP_019176691.1 122 KPRVVWTVELHQKFVKAVNQI-GFDKVGPKKILDLMGVPWLTRENVASHLQKYRL 175 79*****************.9*****************************8 PP
2	Myb_DNA-binding	43.5	7.2e-14	124	174	1	48
TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 r WT e+++++v+av+q G + +k+I mg +t++++ s++qky+ XP_019176691.1 124 RVVWTVELHQKFVKAVNQIGFDkvGPKKILDLMGvPWLTRENVASHLQKYR 174 678***********************************************7 PP
3	Response_reg	32.1	6e-12	1	56	53	109
CTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS Response_reg 53 mpgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109 mp+mdG++ll+ e++lp+i+++ ge + + + ++ Ga d+l Kp+ ++el++ XP_019176691.1 1 MPDMDGFKLLELVGL-EMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRN 56 9*******87754.558*********************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 473 aa Download sequence
MPDMDGFKLL ELVGLEMDLP VIMMSVDGET SRVMKGVQHG ACDYLLKPIR MKELRNIWQH 60 VVRKRMQESR DIDNHESDQF DEAWMLNGIE LQSGKKRKDF DYKFDERETS DSKSGDPSSA 120 KKPRVVWTVE LHQKFVKAVN QIGFDKVGPK KILDLMGVPW LTRENVASHL QKYRLYLTRL 180 QKENELKASS SGTKHPDLSP KESSSSACLQ NLVDVKPSKS TNGKYSFPGE NFFVQEVESR 240 NYEGEVKAAA SLSTAGVSDS QKSISCSKAS CVPVDSVDLE HAGEIPIQYC WASEVSKTGF 300 KHEFKPPQIQ TEDNVNHLPS PKLPQHVQLD QAQPLLNLAP HKDINPGEIK SKPTKTPGVR 360 TVSPLECAVD LLPAQPQSCL TNFQAFEQIP STTWSMKIPE SIEGNLFLGG GSWDKDFNAA 420 ALQGEFHSPC VVGPQSLELL DYSNTNLTGE IQPYLYDYEY AIDPVIDHGL FIL

Sequence ? help Back to Top

Protein Sequence Length: 473 aa Download sequence

MPDMDGFKLL ELVGLEMDLP VIMMSVDGET SRVMKGVQHG ACDYLLKPIR MKELRNIWQH  60
VVRKRMQESR DIDNHESDQF DEAWMLNGIE LQSGKKRKDF DYKFDERETS DSKSGDPSSA  120
KKPRVVWTVE LHQKFVKAVN QIGFDKVGPK KILDLMGVPW LTRENVASHL QKYRLYLTRL  180
QKENELKASS SGTKHPDLSP KESSSSACLQ NLVDVKPSKS TNGKYSFPGE NFFVQEVESR  240
NYEGEVKAAA SLSTAGVSDS QKSISCSKAS CVPVDSVDLE HAGEIPIQYC WASEVSKTGF  300
KHEFKPPQIQ TEDNVNHLPS PKLPQHVQLD QAQPLLNLAP HKDINPGEIK SKPTKTPGVR  360
TVSPLECAVD LLPAQPQSCL TNFQAFEQIP STTWSMKIPE SIEGNLFLGG GSWDKDFNAA  420
ALQGEFHSPC VVGPQSLELL DYSNTNLTGE IQPYLYDYEY AIDPVIDHGL FIL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67710.1	3e-86	ARR-B family protein