PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019176697.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB

Protein Properties

Length: 240aa MW: 27689.5 Da PI: 6.5123

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019176697.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	39.3	1.5e-12	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd +l + G +W+++++ g+ R++k+c++rw +yl XP_019176697.1 14 RGPWTIEEDHKLMTFILNNGIQCWRLVPKLAGLMRCGKSCRLRWINYL 61 89********************************************97 PP
2	Myb_DNA-binding	55.6	1.2e-17	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T+ E+e +++++ qlG++ W++Ia++++ gRt++++k++w++ XP_019176697.1 67 RGALTEAEEEMIIKLHSQLGNR-WSKIAAHFP-GRTDNEIKNHWNT 110 7889****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence
MGRQPCCDKV GLKRGPWTIE EDHKLMTFIL NNGIQCWRLV PKLAGLMRCG KSCRLRWINY 60 LRPDLKRGAL TEAEEEMIIK LHSQLGNRWS KIAAHFPGRT DNEIKNHWNT RIKKKLKLRG 120 LDPTTHKPLD QPGSSIAKIN GVDDHNQQQS SSSGEEEMMM IMKKDYPIPN YEYALQQTLN 180 SSLDESLELE SNIIPAGSED MDTLSMDMYN PDDQRQEPYQ TWIGSPLQWD LFNNLDGNFL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G14340.1	5e-81	MYB family protein