PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019176764.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MIKC_MADS
Protein Properties Length: 206aa    MW: 23514.2 Da    PI: 9.358
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019176764.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF81.17.5e-26956148
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
                    kri+n   rqvtf+kRr g+lKKA+ELSvLCdaevav++fs +gkly+
  XP_019176764.1  9 KRISNPVHRQVTFCKRRGGLLKKAKELSVLCDAEVAVLVFSAHGKLYD 56
                    79********************************************97 PP
2K-box58.62.6e-20851787100
           K-box   7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                     ++  e++ +  ++e++ Lk+ i  Lq+ +R + G +++++s+  L  Le+ Le  + ++Rs K+ l++++i+ l++ke  l+ +nk L++k++e
  XP_019176764.1  85 QEPREKHVQDAKEEINMLKNGITILQEGLRFMHGGGIGTMSIYKLDALEKYLEGWMHHVRSAKMGLMFQEIQLLKNKEGTLRATNKHLQEKVDE 178
                     45678999***********************************************************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    
MGRGKTELKR ISNPVHRQVT FCKRRGGLLK KAKELSVLCD AEVAVLVFSA HGKLYDLATQ  60
GNMQGMIDKY VNFTRGARVT EVSEQEPREK HVQDAKEEIN MLKNGITILQ EGLRFMHGGG  120
IGTMSIYKLD ALEKYLEGWM HHVRSAKMGL MFQEIQLLKN KEGTLRATNK HLQEKVDEEH  180
RTMITSMSSI VTENDIFIMP TSWTDY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71692.12e-68MIKC_MADS family protein