PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019176765.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MIKC_MADS

Protein Properties

Length: 192aa MW: 21907.4 Da PI: 9.0603

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019176765.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	81.3	6.6e-26	9	56	1	48
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48 kri+n rqvtf+kRr g+lKKA+ELSvLCdaevav++fs +gkly+ XP_019176765.1 9 KRISNPVHRQVTFCKRRGGLLKKAKELSVLCDAEVAVLVFSAHGKLYD 56 79********************************************97 PP
2	K-box	48.8	3e-17	85	167	7	89
K-box 7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqe 89 ++ e++ + ++e++ Lk+ i Lq+ +R + G +++++s+ L Le+ Le + ++Rs K+ l++++i+ l++k +e ++ XP_019176765.1 85 QEPREKHVQDAKEEINMLKNGITILQEGLRFMHGGGIGTMSIYKLDALEKYLEGWMHHVRSAKMGLMFQEIQLLKNKVDEEHR 167 45678999*********************************************************************998776 PP

Sequence ? help Back to Top
Protein Sequence Length: 192 aa Download sequence
MGRGKTELKR ISNPVHRQVT FCKRRGGLLK KAKELSVLCD AEVAVLVFSA HGKLYDLATQ 60 GNMQGMIDKY VNFTRGARVT EVSEQEPREK HVQDAKEEIN MLKNGITILQ EGLRFMHGGG 120 IGTMSIYKLD ALEKYLEGWM HHVRSAKMGL MFQEIQLLKN KVDEEHRTMI TSMSSIVTEN 180 DIFIMPTSWT DY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G71692.1	4e-59	MIKC_MADS family protein