PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019176798.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MIKC_MADS

Protein Properties

Length: 231aa MW: 26726.6 Da PI: 9.9014

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019176798.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	97.7	4.8e-31	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqvtf+kRrng+lKKA+ELSvLCdae+a+i+fss+g++yeys+ XP_019176798.1 9 KRIENNTNRQVTFCKRRNGLLKKAYELSVLCDAEIALIVFSSRGRVYEYSN 59 79***********************************************95 PP
2	K-box	96.3	4.9e-32	82	171	9	98
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 +e +a+ +qqe++kL+++i++Lq+++Rhl+Ge+L+s +++eL+qLe++Le++++kiRskK++l+++++e+lqk+e l++en Lr+kl XP_019176798.1 82 PQELNAQFYQQESKKLRQQIHMLQNSNRHLVGEGLGSSNVRELKQLESRLERGISKIRSKKHDLIIAETENLQKREVHLEQENAFLRAKL 171 578899*********************************************************************************996 PP

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence
MGRGKIEIKR IENNTNRQVT FCKRRNGLLK KAYELSVLCD AEIALIVFSS RGRVYEYSNN 60 NIKGTIDRYK KATSDASNIC TPQELNAQFY QQESKKLRQQ IHMLQNSNRH LVGEGLGSSN 120 VRELKQLESR LERGISKIRS KKHDLIIAET ENLQKREVHL EQENAFLRAK LFPFEQIAEN 180 ERLQQLSMMP GAGQEYHAIQ HYLARNMLQL NVMEGVQASY PVPDKKTLHL D

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09960.1	8e-98	MIKC_MADS family protein