PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019176835.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 567aa MW: 63880.1 Da PI: 8.1417

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019176835.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	67.2	4.1e-21	55	139	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Yn+YA+++GFsvrk +++++ +++i +++f+Csk g+++++ k ++ trtgC a ++ +dg w vtk e+ HnHel+ XP_019176835.1 55 LYNNYAYRLGFSVRKGHQRYKGSTNTIQMKNFCCSKAGYKANSGVK----AYSKIDTRTGCGAFVQFGVGDDGLWTVTKHEKVHNHELC 139 7******************99999***********99877....8999*******************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 567 aa Download sequence
MEDGTEQTNS AVGDWHSIQV SSDQADVDVD GSSSIPVDQD LVGLVVSNAD EAFELYNNYA 60 YRLGFSVRKG HQRYKGSTNT IQMKNFCCSK AGYKANSGVK AYSKIDTRTG CGAFVQFGVG 120 DDGLWTVTKH EKVHNHELCV FNKSHLLRSH RSVGDNQLLY LHGLKDSGVA LADGIRFLKH 180 QSGGSPLVGF TNRDAYNSMA ADTVKRLDGT DSNSLIEIFR RRQSTETDFF FDFELDLDAR 240 LCRMNHHCMN VMFGCGIFMN GRIESFVWLF KAFLRSMGGK CPQTIMTDQC AAMAAAISKV 300 FPKSRHRLCI WHIETEAEFQ FYWTRLVTDY KCHKNTWLEK LYDCREKWCP AFNKDYFSGG 360 ILSSQRSETT NHSISRRLSK TANLCDFYSS FVSVISEWRS KGECIPDKYI LKRWTKTVID 420 GRNVNIDSMV YNVGVPPSIW VFDISRKFQR LVVSSQDSSV ARKLCDEAVD DVKKKVEAEI 480 GHVHIEPEIE SERNKRRSDV IEKKYSLARG RRSATNKAAL STKGAVQSLV LDNISKLAGD 540 GYLVHPSSSS SDFVQFSKGL DDNVGVD

Sequence ? help Back to Top

Protein Sequence Length: 567 aa Download sequence

MEDGTEQTNS AVGDWHSIQV SSDQADVDVD GSSSIPVDQD LVGLVVSNAD EAFELYNNYA  60
YRLGFSVRKG HQRYKGSTNT IQMKNFCCSK AGYKANSGVK AYSKIDTRTG CGAFVQFGVG  120
DDGLWTVTKH EKVHNHELCV FNKSHLLRSH RSVGDNQLLY LHGLKDSGVA LADGIRFLKH  180
QSGGSPLVGF TNRDAYNSMA ADTVKRLDGT DSNSLIEIFR RRQSTETDFF FDFELDLDAR  240
LCRMNHHCMN VMFGCGIFMN GRIESFVWLF KAFLRSMGGK CPQTIMTDQC AAMAAAISKV  300
FPKSRHRLCI WHIETEAEFQ FYWTRLVTDY KCHKNTWLEK LYDCREKWCP AFNKDYFSGG  360
ILSSQRSETT NHSISRRLSK TANLCDFYSS FVSVISEWRS KGECIPDKYI LKRWTKTVID  420
GRNVNIDSMV YNVGVPPSIW VFDISRKFQR LVVSSQDSSV ARKLCDEAVD DVKKKVEAEI  480
GHVHIEPEIE SERNKRRSDV IEKKYSLARG RRSATNKAAL STKGAVQSLV LDNISKLAGD  540
GYLVHPSSSS SDFVQFSKGL DDNVGVD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	6e-40	FAR1 family protein