PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019176860.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

ARR-B

Protein Properties

Length: 509aa MW: 55762.7 Da PI: 6.7937

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019176860.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	68.4	1.2e-21	226	275	4	54
G2-like 4 lrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54 +Wt eLHe+F++av+qL G + Pk+ilelm+v+gLt+ +v+SHLQk R XP_019176860.1 226 TEWTVELHEKFMNAVHQL-GDGRCYPKEILELMNVPGLTRMQVASHLQKCR 275 58**************.9***************************98 PP
2	Myb_DNA-binding	40	9.3e-13	227	274	3	47
SS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqky 47 WT e++e++ +av+qlG g +k I + m+ g+t+ q+ s++qk XP_019176860.1 227 EWTVELHEKFMNAVHQLGDGrcYPKEILELMNvPGLTRMQVASHLQKC 274 6*********************************************97 PP
3	Response_reg	46.3	2.3e-16	30	137	1	109
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH..HHHHESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealell..kekdpDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 vl++d + +++ +l+++ y +v+++d +++al l ke+++D ++ ++ p+m+G++ll++ + +l +i++ ++++ e+a++ ++ G XP_019176860.1 30 VLVSDHDLKFLASTVDMLKRHFY-KVTVVDCASAALSVLsqKEQKFDAVIANVNSPDMQGFKLLRQAVSM--DLIVILLCDEEDAEMAVRLIEHG 121 7888999999***********.***********655555**************9987775..5****************** PP ESEEEESS--HHHHHH CS Response_reg 94 akdflsKpfdpeelvk 109 a l Kp+ +e l + XP_019176860.1 122 AFLLLQKPMCQETLKN 137 ******99888865 PP

Sequence ? help Back to Top
Protein Sequence Length: 509 aa Download sequence
MWRLPEYQID NPYANISMAS HHMVTNGIHV LVSDHDLKFL ASTVDMLKRH FYKVTVVDCA 60 SAALSVLSQK EQKFDAVIAN VNSPDMQGFK LLRQAVSMDL IVILLCDEED AEMAVRLIEH 120 GAFLLLQKPM CQETLKNLWQ HVVRERNVQR GKEMMLMEKN NRELAVINNG GGGADRGKGV 180 RVEENENYEM SYRGKGKRTR QQQSLNESTQ MMMNPGLARV KRKTCTEWTV ELHEKFMNAV 240 HQLGDGRCYP KEILELMNVP GLTRMQVASH LQKCRNDNWK APEERRAPPT SSVSPATESA 300 SRNEQRRFGT MPRLTAAVVA AAAAAAAGNS QTERQQLEST TLPEVQSSPS MDGAGRGDSS 360 QTLVHRQYLT IGYAATHVSK LDSSSPPSVV RPVAASASAA VAVTTFNATS GQASIVGSFN 420 YGSEGGLQGL SGGGGGSLFG NKDDFSADNP SNTTTGDDSY ATPPPPRLRS LQSDEFLTYN 480 DVDYEYLIQG FSDNNARQGG VGLQAPWLA

Sequence ? help Back to Top

Protein Sequence Length: 509 aa Download sequence

MWRLPEYQID NPYANISMAS HHMVTNGIHV LVSDHDLKFL ASTVDMLKRH FYKVTVVDCA  60
SAALSVLSQK EQKFDAVIAN VNSPDMQGFK LLRQAVSMDL IVILLCDEED AEMAVRLIEH  120
GAFLLLQKPM CQETLKNLWQ HVVRERNVQR GKEMMLMEKN NRELAVINNG GGGADRGKGV  180
RVEENENYEM SYRGKGKRTR QQQSLNESTQ MMMNPGLARV KRKTCTEWTV ELHEKFMNAV  240
HQLGDGRCYP KEILELMNVP GLTRMQVASH LQKCRNDNWK APEERRAPPT SSVSPATESA  300
SRNEQRRFGT MPRLTAAVVA AAAAAAAGNS QTERQQLEST TLPEVQSSPS MDGAGRGDSS  360
QTLVHRQYLT IGYAATHVSK LDSSSPPSVV RPVAASASAA VAVTTFNATS GQASIVGSFN  420
YGSEGGLQGL SGGGGGSLFG NKDDFSADNP SNTTTGDDSY ATPPPPRLRS LQSDEFLTYN  480
DVDYEYLIQG FSDNNARQGG VGLQAPWLA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G16857.2	3e-40	ARR-B family protein