PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019176929.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

TCP

Protein Properties

Length: 293aa MW: 33427.4 Da PI: 7.2851

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019176929.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	128.3	8e-40	94	216	3	135
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.ssssaseceaesssssasnsssgkaaksaak 96 kkdrhski T+ g+RdRR+Rls+++a++fFdLqd LGfdk+skt++WLl+++ ai +l+ + + s++secea+ +++k+++k XP_019176929.1 94 SKKDRHSKITTAHGPRDRRMRLSLDVAREFFDLQDTLGFDKASKTVDWLLTKSSSAIRDLAASlGLSPSSECEAH-----------CDEKKEKKK 177 59********************************************************999999999999211...........234455568 PP TCP 97 skksqksaasalnlakesrakarararertrekmriknk 135 + ++++ a++l+l kesr+kar+rarert k++++++ XP_019176929.1 178 RARAPRIRAAFLALTKESRKKARERARERTMMKKKLEEE 216 88889999999*****************999887755 PP

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence
MQHPSSNNSF NNYYNSPILS PSSSSLYHIP SSPIHYEDEL LLLQALILQQ QQSQPLIMEE 60 DEESKKAQIT INADPPYKND ENGGPNKKRA PSCSKKDRHS KITTAHGPRD RRMRLSLDVA 120 REFFDLQDTL GFDKASKTVD WLLTKSSSAI RDLAASLGLS PSSECEAHCD EKKEKKKRAR 180 APRIRAAFLA LTKESRKKAR ERARERTMMK KKLEEEEEQQ ELSSQSQMGS RVNKQLSGTY 240 QQNNGGIFSQ ELQDDDLEVE LLSSHFHIHV NNQLSPFRDF PPELWEACNK GDL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	196	212	RKKARERARERTMMKKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68800.1	4e-25	TCP family protein