PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019176987.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB_related

Protein Properties

Length: 539aa MW: 61490.4 Da PI: 7.2265

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019176987.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	32	2.9e-10	107	147	4	45
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 W ++E+ ll+++++++G g W+ + +++g ++t c+++++ XP_019176987.1 107 WNADEEMLLLEGIEMYGIGKWAEVGEHVG-TKTKDACIEHYR 147 ***************************.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 539 aa Download sequence
MGRSRGNFHA EEDPSQRSRR KKNASNGENL DYITAGQGSG EGKPASYHCN YCNKDITGRI 60 RIKCAVCSDF DLCIECFSVG AEVQPHKSNH PYRVMDILSF PLICPDWNAD EEMLLLEGIE 120 MYGIGKWAEV GEHVGTKTKD ACIEHYRSAY LNSPYFPLPD MTHVVGRNRE ELLAMSKENG 180 EDKKGFVSLG ELARKNELPY SPSRVKLEDS NRSGSSGRLT SASNTGTAGI KKPSKKVLTK 240 DQTDSVKLED NVSALNFGSK KPKLSKDEGP SLMEISGYNP KRHEFDPEYD NDAEQLLADM 300 EFKDADTEEE RELKLRVLRI YSKRLDERKR RKDFITERNL LYPTEFEKTL SQEEKDIWRR 360 YDAFMRFHSR GEHEELLKAI ISEHRILKRI KELKEARAAG CRSSAEADRY FEQKRKREVE 420 ENGPKKENYH VGPSSLDSLS SLGTHSNKRS SSLANLSSLT DLEFAAHSAI ELLSEPEKQL 480 CRDIRMPAPH YLKMLELMTV HIYSGDITKK SDAYTFFQIE TTKVDRVYDM LLKKGIAPL

Sequence ? help Back to Top

Protein Sequence Length: 539 aa Download sequence

MGRSRGNFHA EEDPSQRSRR KKNASNGENL DYITAGQGSG EGKPASYHCN YCNKDITGRI  60
RIKCAVCSDF DLCIECFSVG AEVQPHKSNH PYRVMDILSF PLICPDWNAD EEMLLLEGIE  120
MYGIGKWAEV GEHVGTKTKD ACIEHYRSAY LNSPYFPLPD MTHVVGRNRE ELLAMSKENG  180
EDKKGFVSLG ELARKNELPY SPSRVKLEDS NRSGSSGRLT SASNTGTAGI KKPSKKVLTK  240
DQTDSVKLED NVSALNFGSK KPKLSKDEGP SLMEISGYNP KRHEFDPEYD NDAEQLLADM  300
EFKDADTEEE RELKLRVLRI YSKRLDERKR RKDFITERNL LYPTEFEKTL SQEEKDIWRR  360
YDAFMRFHSR GEHEELLKAI ISEHRILKRI KELKEARAAG CRSSAEADRY FEQKRKREVE  420
ENGPKKENYH VGPSSLDSLS SLGTHSNKRS SSLANLSSLT DLEFAAHSAI ELLSEPEKQL  480
CRDIRMPAPH YLKMLELMTV HIYSGDITKK SDAYTFFQIE TTKVDRVYDM LLKKGIAPL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	328	333	RKRRKD