PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019177066.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 1018aa    MW: 114324 Da    PI: 8.4981
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019177066.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.92.3e-08411454346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +W+  Ed+ l++ v+q G  +W  Ia  +g++Rt+ qc  r+q 
   XP_019177066.1 411 PWSVVEDKNLLHIVQQKGLSNWIDIALSLGTNRTPFQCLARYQR 454
                      8*****************************************96 PP
2Myb_DNA-binding445.1e-14463507247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        WT+eEd +l  av+ +G  +W  +a+ +  gRt+ qc +rw k 
   XP_019177066.1 463 REWTEEEDNKLRAAVEAFGESNWQVVAASLE-GRTGTQCSNRWIKT 507
                      68*****************************.***********987 PP
3Myb_DNA-binding54.33.1e-17516559246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g+WT++Ed++l+ av ++G++tW++Ia++++ gRt  qc++rw +
   XP_019177066.1 516 GKWTADEDKRLKVAVMLFGPKTWRKIAQYVP-GRTHVQCRERWVN 559
                      79*****************************.***********87 PP
4Myb_DNA-binding37.84.3e-12569611347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       WT eEd++l  a++++G   W+++a+++   Rt+ qc+ rw  +
   XP_019177066.1 569 VWTGEEDLKLEAAIQEHGYS-WSKVAACVA-PRTDSQCRRRWKVL 611
                      6*****************99.*********.9**********865 PP
Sequence ? help Back to Top
Protein Sequence    Length: 1018 aa     Download sequence    
MASDSDEEFD GDDGFEADME ALKRACVLAG ASPGHADDDF SGRSVSNSVP SSPDTDDGVD  60
DVELVRDIQK RFALSTDVQV PLDMRPICSL FPTKSGNESE DDIETLRAIE RRFASYYDDT  120
TKEELDKELH NTEQVGVTNI TSEEESCNNF FLERTNAGEG FPTCVDGNNS ALPISEGAIP  180
QDGGAENASS ESSGFPKSAQ AFVDAIKKNR AFQKLIRSKM IHVEARIEEL KKLKDRVKIL  240
KDYQVSCRKR TGHALAQKKD ARVQLILPRQ RVNSKPSEKK SSALYYAPPE NSLVASYRDA  300
SEKFPVSVNR EKWSKEEREN LLKGVKQQFQ ETMFQRAIDL SDMDGSFGDM TNIDSNILSI  360
KDLDITPEMM RLFLPKVNWD RLASMYVPRH SGAECQTRWL NWEDPLINQE PWSVVEDKNL  420
LHIVQQKGLS NWIDIALSLG TNRTPFQCLA RYQRSLNASI IKREWTEEED NKLRAAVEAF  480
GESNWQVVAA SLEGRTGTQC SNRWIKTLHP ARQRVGKWTA DEDKRLKVAV MLFGPKTWRK  540
IAQYVPGRTH VQCRERWVNS LDPSLNLNVW TGEEDLKLEA AIQEHGYSWS KVAACVAPRT  600
DSQCRRRWKV LFPKEVPLLR EARKIQKVAL ISNFVDRESE RPSLKPDDFA PVPLLLQASG  660
SEPSRKRKMA SSNMSSDDPT IAENRRYGIT YKSRRSRRQP KRKICTNRRR KRPPFANPGM  720
LCNGNELGGG LEFSVAMNNR TSKLPPRKKR KRGPYVEVPE ISGSDEIETT NGDDIIFKRS  780
TRGTEFDSGS DNDAKLDASS FPNSISDART LGGKAMKSRK RSKRRPRKNC SDLYVSEGNH  840
PFPTSRKREG PLRELPGSNL DSDPSGELYD SSLSFEENSE LESGAKQVEV SHDRSSPSNN  900
LRTSRCCMQG KKKGLKHRDV DHSNKLAETE DDDSITLAAF LKKSVRRSDH NSNESGAIPE  960
CNIHTPTTSR GCGIQGDGNG LGLGPSPPTS EAGIMDDMPL AHFLNTLKRR RVKPATSK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1664669SRKRKM
2697703RRQPKRK
3697713RRQPKRKICTNRRRKRP
4747752RKKRKR
5820828KRSKRRPRK
610071014LKRRRVKP
710081012KRRRV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18100.10.0MYB family protein