PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019177068.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 961aa    MW: 107878 Da    PI: 8.8591
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019177068.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding262.2e-08354397346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +W+  Ed+ l++ v+q G  +W  Ia  +g++Rt+ qc  r+q 
   XP_019177068.1 354 PWSVVEDKNLLHIVQQKGLSNWIDIALSLGTNRTPFQCLARYQR 397
                      8*****************************************96 PP
2Myb_DNA-binding44.14.7e-14406450247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        WT+eEd +l  av+ +G  +W  +a+ +  gRt+ qc +rw k 
   XP_019177068.1 406 REWTEEEDNKLRAAVEAFGESNWQVVAASLE-GRTGTQCSNRWIKT 450
                      68*****************************.***********987 PP
3Myb_DNA-binding54.42.9e-17459502246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g+WT++Ed++l+ av ++G++tW++Ia++++ gRt  qc++rw +
   XP_019177068.1 459 GKWTADEDKRLKVAVMLFGPKTWRKIAQYVP-GRTHVQCRERWVN 502
                      79*****************************.***********87 PP
4Myb_DNA-binding37.94e-12512554347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       WT eEd++l  a++++G   W+++a+++   Rt+ qc+ rw  +
   XP_019177068.1 512 VWTGEEDLKLEAAIQEHGYS-WSKVAACVA-PRTDSQCRRRWKVL 554
                      6*****************99.*********.9**********865 PP
Sequence ? help Back to Top
Protein Sequence    Length: 961 aa     Download sequence    
MASDSDEEFD GDDGFEADME ALKRACVLAG ASPGHADDDF SGRSVSNSVP SSPDTDDGVD  60
DVELVRDIQK RFALSTDVQV PLDMRPICSL FPTKSGNESE DDIETLRAIE RRFASYYDDT  120
TKEELDKELH NTEQVGVTNI TSEEESCNNF FLERTNAGEG FPTCVDGNNS ALPISEGAIP  180
QDGGAENASS ESSGFPKSAQ AFVDAIKKNR AFQKLIRSKM IHVEARIEEL KKLKDRVKIL  240
KDYQVSCRKR TGHALAQKKD ARVQLILPRQ RVNSKPSEKK SSALYYAPPE NSLVASYRDA  300
SEKFPVSVNR EKWSKEEREN LLKGVKQQFQ ETMFQRAIDL RWLNWEDPLI NQEPWSVVED  360
KNLLHIVQQK GLSNWIDIAL SLGTNRTPFQ CLARYQRSLN ASIIKREWTE EEDNKLRAAV  420
EAFGESNWQV VAASLEGRTG TQCSNRWIKT LHPARQRVGK WTADEDKRLK VAVMLFGPKT  480
WRKIAQYVPG RTHVQCRERW VNSLDPSLNL NVWTGEEDLK LEAAIQEHGY SWSKVAACVA  540
PRTDSQCRRR WKVLFPKEVP LLREARKIQK VALISNFVDR ESERPSLKPD DFAPVPLLLQ  600
ASGSEPSRKR KMASSNMSSD DPTIAENRRY GITYKSRRSR RQPKRKICTN RRRKRPPFAN  660
PGMLCNGNEL GGGLEFSVAM NNRTSKLPPR KKRKRGPYVE VPEISGSDEI ETTNGDDIIF  720
KRSTRGTEFD SGSDNDAKLD ASSFPNSISD ARTLGGKAMK SRKRSKRRPR KNCSDLYVSE  780
GNHPFPTSRK REGPLRELPG SNLDSDPSGE LYDSSLSFEE NSELESGAKQ VEVSHDRSSP  840
SNNLRTSRCC MQGKKKGLKH RDVDHSNKLA ETEDDDSITL AAFLKKSVRR SDHNSNESGA  900
IPECNIHTPT TSRGCGIQGD GNGLGLGPSP PTSEAGIMDD MPLAHFLNTL KRRRVKPATS  960
K
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1607612SRKRKM
2640646RRQPKRK
3640656RRQPKRKICTNRRRKRP
4690695RKKRKR
5763771KRSKRRPRK
6950957LKRRRVKP
7951955KRRRV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18100.11e-165MYB family protein