PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019177138.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB_related

Protein Properties

Length: 426aa MW: 46887 Da PI: 9.6596

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019177138.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.9	1.7e-16	44	88	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT+eE+ +++da k++G W++I +++g ++t+ q++s+ qk+ XP_019177138.1 44 RERWTEEEHRKFLDALKLYGRA-WRRIEEHVG-TKTAVQIRSHAQKF 88 78****************88.*****.**********98 PP

Sequence ? help Back to Top
Protein Sequence Length: 426 aa Download sequence
MVPAPMTSQD QNGGMGNCIS ARRIQQSDEH AIKVRKPYTI TKQRERWTEE EHRKFLDALK 60 LYGRAWRRIE EHVGTKTAVQ IRSHAQKFFS KVERESNGDD AKTVKPIEIP PPRPKRKPMH 120 PYPRKLVITP VSVVGMLDPE KPTRSLSPNL SVSEKENRSP TSVLFALDSE GQASADSSPN 180 ASPSCVSSAT GGGILFSKHC NVLVEENGSS SPPPGNLELL PLDDGRVRES STAQYLKLFG 240 KTVLVSGSHT LSSPTSRDLK APMATHSFSW NLSIGHGDYS ECKPVPSLPW ALPRAPSSSA 300 GFPCVQVHSP VAIKARPFSF DSKDNVEEKE DAKEGSSTCS NSGSVNVGIC VDKNLDTETQ 360 SGQRIGSDSS CFKRTTEIVI LEQKTARSTK RTKGFMPYKR CLAERATRLP SITSEEREKQ 420 RTRLCL

Sequence ? help Back to Top

Protein Sequence Length: 426 aa Download sequence

MVPAPMTSQD QNGGMGNCIS ARRIQQSDEH AIKVRKPYTI TKQRERWTEE EHRKFLDALK  60
LYGRAWRRIE EHVGTKTAVQ IRSHAQKFFS KVERESNGDD AKTVKPIEIP PPRPKRKPMH  120
PYPRKLVITP VSVVGMLDPE KPTRSLSPNL SVSEKENRSP TSVLFALDSE GQASADSSPN  180
ASPSCVSSAT GGGILFSKHC NVLVEENGSS SPPPGNLELL PLDDGRVRES STAQYLKLFG  240
KTVLVSGSHT LSSPTSRDLK APMATHSFSW NLSIGHGDYS ECKPVPSLPW ALPRAPSSSA  300
GFPCVQVHSP VAIKARPFSF DSKDNVEEKE DAKEGSSTCS NSGSVNVGIC VDKNLDTETQ  360
SGQRIGSDSS CFKRTTEIVI LEQKTARSTK RTKGFMPYKR CLAERATRLP SITSEEREKQ  420
RTRLCL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17300.1	1e-47	MYB_related family protein