PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019177171.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 749aa MW: 85091.6 Da PI: 7.3359

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019177171.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	62.8	1e-19	71	157	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Yn+YA++vGFsvrk +++ + ++++ ++ f+Csk g++ + + + ++ tr gC a+++ +dg w vtk ++ HnHel+ XP_019177171.1 71 LYNNYAYRVGFSVRKGNQRCKVYSKTVQMKMFMCSKAGFKVKANAG--VRAYSKIDTRSGCGACVQFDVGEDGLWTVTKHVKVHNHELC 157 7*************************************998877..888899********************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 749 aa Download sequence
MDDAVDQRDE ALDQRDEAGD ELHTVPVSED VVVDSPSSDP IELDIDGSSS NPVDEDLVGV 60 VVSNGVEAYE LYNNYAYRVG FSVRKGNQRC KVYSKTVQMK MFMCSKAGFK VKANAGVRAY 120 SKIDTRSGCG ACVQFDVGED GLWTVTKHVK VHNHELCAVD KSHLLRSHRN VGDNQLLYLK 180 DLKKSGVAMA DGIRFLKHQA GGSPLVGFTN RDAYNSIASD TSKRLDGTDY AVFFWRDGRM 240 RQDYELFGDL LVHDTTYRTN KYDMICGPFV GMNHHCMNVM FGCGFLMNER IESFVWLFRA 300 FLRSMNEKCP QTIMTDQCAS MAAAICQVFP TSRHRLCIWH IGENSKKHIK ALRNNKDFLD 360 MFNCVLKYTE TEAEFEFYWT RLVTDYKCHK NSWIQKLYDC REKWCPAFNK DYFSGGILSS 420 QRSETTNHSI SRRLSKTAGL CDFYSSFVSV TSEWRSKENG EDFRCTQGVP NMMMEHVKLL 480 LHAREVYTIE IYFLFEEQFM KGNACHQEMV LNEGCQFKYH VWRPDIDIIR HEVSFKLSTL 540 DISCSCKLIS ELGILCCHCL RILHIHCVSS IPNKYIMKRW TKKVADGRDV NTGSMFCRAG 600 VPPSIWVVEI CRKFQRLISS SQDNSVTRQF CDEAVEEAKK KVEAEISYVQ IEECGVSSSS 660 GVIQNPSNRR SKGERNVRRS SVIEKKYSAA RGRRSAANKV ASSTKGAVQS LVLESLSEIA 720 GDGYLVHPSF GSSEFCQYSN DVDDNAVVD

Sequence ? help Back to Top

Protein Sequence Length: 749 aa Download sequence

MDDAVDQRDE ALDQRDEAGD ELHTVPVSED VVVDSPSSDP IELDIDGSSS NPVDEDLVGV  60
VVSNGVEAYE LYNNYAYRVG FSVRKGNQRC KVYSKTVQMK MFMCSKAGFK VKANAGVRAY  120
SKIDTRSGCG ACVQFDVGED GLWTVTKHVK VHNHELCAVD KSHLLRSHRN VGDNQLLYLK  180
DLKKSGVAMA DGIRFLKHQA GGSPLVGFTN RDAYNSIASD TSKRLDGTDY AVFFWRDGRM  240
RQDYELFGDL LVHDTTYRTN KYDMICGPFV GMNHHCMNVM FGCGFLMNER IESFVWLFRA  300
FLRSMNEKCP QTIMTDQCAS MAAAICQVFP TSRHRLCIWH IGENSKKHIK ALRNNKDFLD  360
MFNCVLKYTE TEAEFEFYWT RLVTDYKCHK NSWIQKLYDC REKWCPAFNK DYFSGGILSS  420
QRSETTNHSI SRRLSKTAGL CDFYSSFVSV TSEWRSKENG EDFRCTQGVP NMMMEHVKLL  480
LHAREVYTIE IYFLFEEQFM KGNACHQEMV LNEGCQFKYH VWRPDIDIIR HEVSFKLSTL  540
DISCSCKLIS ELGILCCHCL RILHIHCVSS IPNKYIMKRW TKKVADGRDV NTGSMFCRAG  600
VPPSIWVVEI CRKFQRLISS SQDNSVTRQF CDEAVEEAKK KVEAEISYVQ IEECGVSSSS  660
GVIQNPSNRR SKGERNVRRS SVIEKKYSAA RGRRSAANKV ASSTKGAVQS LVLESLSEIA  720
GDGYLVHPSF GSSEFCQYSN DVDDNAVVD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-73	FAR1 family protein