PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019177242.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family NF-YB
Protein Properties Length: 238aa    MW: 26731.9 Da    PI: 7.2075
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019177242.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB179.53.1e-5642137297
           NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 
                     +eqdrflPianv+rimkkv+P+n+kisk+aketvqecvsefisfvt+easdkcqrekrktingdd+lwa++tlGfedyv+plk+yl+kyrelege
  XP_019177242.1  42 KEQDRFLPIANVGRIMKKVIPGNGKISKEAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDILWAITTLGFEDYVNPLKLYLNKYRELEGE 136
                     89*******************************************************************************************99 PP

           NF-YB  97 k 97 
                     k
  XP_019177242.1 137 K 137
                     6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    
MMTTTTAEND ERKTGNIPNL AVVRASPESK PTNSANNNNN SKEQDRFLPI ANVGRIMKKV  60
IPGNGKISKE AKETVQECVS EFISFVTGEA SDKCQREKRK TINGDDILWA ITTLGFEDYV  120
NPLKLYLNKY RELEGEKLNL PKQPPPPQQQ LQQQHHVHDQ LLPPTAAANL AYNATATNVY  180
SPSPATLLSH HHQPSYMSPS DHHHHLLHQQ FPNLPFSPQN SVQSQLTPQE HIDSVGHW
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G13570.13e-68NF-YB family protein