PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019177398.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB

Protein Properties

Length: 268aa MW: 30232.7 Da PI: 8.3876

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019177398.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	42.1	2e-13	10	57	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed +l+ +v+++G ++W+ ++ g++R++k+c++rw +yl XP_019177398.1 10 KGPWTEQEDVQLAFYVNLFGDRRWDFLSKISGLKRSGKSCRLRWVNYL 57 79********************************************97 PP
2	Myb_DNA-binding	54.8	2.2e-17	63	106	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++T+ E+ l+++++ +lG++ W++Iar+++ gRt++++k++w++ XP_019177398.1 63 RGKMTPNEERLILELHSKLGNR-WSKIARKLP-GRTDNEIKNYWRT 106 89******************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence
MRIVGEEVRK GPWTEQEDVQ LAFYVNLFGD RRWDFLSKIS GLKRSGKSCR LRWVNYLHPG 60 LKRGKMTPNE ERLILELHSK LGNRWSKIAR KLPGRTDNEI KNYWRTQMRK EAHDKKKKKQ 120 QQKGGGGGAS SSPSSLSNSS SSSSGSPGEE STPAVVGANE RAFYDTGGFV EAPPPPPRAD 180 NGEKMGGGVK VYSMDEIWKA IESPEIQESH GGGERSMIGS AIWDDYSVWT MDYDYQEDER 240 NLVAPVSDQF YSWFDNQLDF AHNTFLTG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G59780.3	2e-65	MYB family protein