PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019177713.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

AP2

Protein Properties

Length: 493aa MW: 54816 Da PI: 9.1584

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019177713.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	55.6	1.4e-17	154	203	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta+ Aa+a++ a++k++g XP_019177713.1 154 SQYRGVTFYRRTGRWESHIWD------SgKQVYLGGFDTAYAAARAYDLAALKFRG 203 78*****************......44**********************997 PP
2	AP2	41.9	2.5e-13	246	296	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ g +k+++lg f+++ eAa+a+++a+ k++g XP_019177713.1 246 SKYRGVTLHK-CGRWEAR---M---GqllGKKYIYLGLFDSEVEAARAYDKAAIKFNG 296 89******.7**...5...334336******99*********9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 493 aa Download sequence
MLDLNLSVLH CDESAYERLR EGSRADESGT TSSHSSQMNA KISGNAGVED TCSTRGRDVF 60 SLNFEILKAG RGNDDGYESR RVTRPVFVTR QLFPVSEGEL NRVEASGQPD REVNLSFCQA 120 EVGRVEQNHH QQPPPQPQPQ KVKKSRRGPR SRSSQYRGVT FYRRTGRWES HIWDSGKQVY 180 LGGFDTAYAA ARAYDLAALK FRGVDADINF SISEYKDGMK QIKSLNKEEF VHMLRRQSTG 240 FSRGTSKYRG VTLHKCGRWE ARMGQLLGKK YIYLGLFDSE VEAARAYDKA AIKFNGREAV 300 TNFDPSTYDG QTISNPLNEG SQHDLDLNLG IITSSPKENR NTGNLQYHLL HSGTSDMDKS 360 GETKLVSPDL NARLIPSEQP QLCTGVYSNV YPKSEDWQQM ASERRMEVCS SQGALKWGSQ 420 RHGHIGTTNM VAMLSAASSG FSTPPTTKSV AVSVSTSPIT APKVTSLNLC FAYPNASTNT 480 PTQSYYQQVR PPQ

Sequence ? help Back to Top

Protein Sequence Length: 493 aa Download sequence

MLDLNLSVLH CDESAYERLR EGSRADESGT TSSHSSQMNA KISGNAGVED TCSTRGRDVF  60
SLNFEILKAG RGNDDGYESR RVTRPVFVTR QLFPVSEGEL NRVEASGQPD REVNLSFCQA  120
EVGRVEQNHH QQPPPQPQPQ KVKKSRRGPR SRSSQYRGVT FYRRTGRWES HIWDSGKQVY  180
LGGFDTAYAA ARAYDLAALK FRGVDADINF SISEYKDGMK QIKSLNKEEF VHMLRRQSTG  240
FSRGTSKYRG VTLHKCGRWE ARMGQLLGKK YIYLGLFDSE VEAARAYDKA AIKFNGREAV  300
TNFDPSTYDG QTISNPLNEG SQHDLDLNLG IITSSPKENR NTGNLQYHLL HSGTSDMDKS  360
GETKLVSPDL NARLIPSEQP QLCTGVYSNV YPKSEDWQQM ASERRMEVCS SQGALKWGSQ  420
RHGHIGTTNM VAMLSAASSG FSTPPTTKSV AVSVSTSPIT APKVTSLNLC FAYPNASTNT  480
PTQSYYQQVR PPQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28550.3	1e-102	AP2 family protein