PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019177719.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

AP2

Protein Properties

Length: 490aa MW: 54386.6 Da PI: 9.2762

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019177719.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	55.6	1.3e-17	154	203	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta+ Aa+a++ a++k++g XP_019177719.1 154 SQYRGVTFYRRTGRWESHIWD------SgKQVYLGGFDTAYAAARAYDLAALKFRG 203 78*****************......44**********************997 PP
2	AP2	41.9	2.5e-13	246	296	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ g +k+++lg f+++ eAa+a+++a+ k++g XP_019177719.1 246 SKYRGVTLHK-CGRWEAR---M---GqllGKKYIYLGLFDSEVEAARAYDKAAIKFNG 296 89******.7**...5...334336******99*********9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 490 aa Download sequence
MLDLNLSVLH CDESAYERLR EGSRADESGT TSSHSSQMNA KISGNAGVED TCSTRGRDVF 60 SLNFEILKAG RGNDDGYESR RVTRPVFVTR QLFPVSEGEL NRVEASGQPD REVNLSFCQA 120 EVGRVEQNHH QQPPPQPQPQ KVKKSRRGPR SRSSQYRGVT FYRRTGRWES HIWDSGKQVY 180 LGGFDTAYAA ARAYDLAALK FRGVDADINF SISEYKDGMK QIKSLNKEEF VHMLRRQSTG 240 FSRGTSKYRG VTLHKCGRWE ARMGQLLGKK YIYLGLFDSE VEAARAYDKA AIKFNGREAV 300 TNFDPSTYDG QTISNPLNEG SQHDLDLNLG IITSSPKENR NTGNLQYHLL HSGTSDMDKS 360 GETKLVSPDL NARLIPSEQP QLCTGVYSNV YPKSEQMASE RRMEVCSSQG ALKWGSQRHG 420 HIGTTNMVAM LSAASSGFST PPTTKSVAVS VSTSPITAPK VTSLNLCFAY PNASTNTPTQ 480 SYYQQVRPPQ

Sequence ? help Back to Top

Protein Sequence Length: 490 aa Download sequence

MLDLNLSVLH CDESAYERLR EGSRADESGT TSSHSSQMNA KISGNAGVED TCSTRGRDVF  60
SLNFEILKAG RGNDDGYESR RVTRPVFVTR QLFPVSEGEL NRVEASGQPD REVNLSFCQA  120
EVGRVEQNHH QQPPPQPQPQ KVKKSRRGPR SRSSQYRGVT FYRRTGRWES HIWDSGKQVY  180
LGGFDTAYAA ARAYDLAALK FRGVDADINF SISEYKDGMK QIKSLNKEEF VHMLRRQSTG  240
FSRGTSKYRG VTLHKCGRWE ARMGQLLGKK YIYLGLFDSE VEAARAYDKA AIKFNGREAV  300
TNFDPSTYDG QTISNPLNEG SQHDLDLNLG IITSSPKENR NTGNLQYHLL HSGTSDMDKS  360
GETKLVSPDL NARLIPSEQP QLCTGVYSNV YPKSEQMASE RRMEVCSSQG ALKWGSQRHG  420
HIGTTNMVAM LSAASSGFST PPTTKSVAVS VSTSPITAPK VTSLNLCFAY PNASTNTPTQ  480
SYYQQVRPPQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28550.3	1e-103	AP2 family protein