PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019178038.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB_related
Protein Properties Length: 307aa    MW: 33706 Da    PI: 9.5302
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019178038.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.72.4e-124690147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r +WT+ E++++++a +++  + Wk+I + +g  +t  q++s+ qky
   XP_019178038.1 46 RESWTEPEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 90
                     789*****************77.*********.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    
MGMAVANPDS ISSPTAVNSN ALPSSSSYSD DPTKKVRKPY TITKSRESWT EPEHDKFLEA  60
LQLFDRDWKK IEAFVGSKTV IQIRSHAQKY FMKVQKSGTN EHLPPPRPKR KATHPYPQKA  120
PKSAPTVSSL SNSFQTPLAF PDAGLTPKPD PSLIPIVPVT GAALPPWKDY SVQAGSSSVK  180
KDNMSSVGQA HVYTYSSSGN EGAPSELTDQ GANGSSMKVL PDFAQVYNFI GSVFDPNVTG  240
HLQKLKEMDR IDVETVLLLM RNLSINLTRP DFEDHRRLLS SYEDVASDGG GNKVLCEKKS  300
QNAARIW
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.21e-103MYB_related family protein