PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019178237.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 465aa MW: 50808.5 Da PI: 7.1619

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019178237.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.5	2.8e-09	258	305	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + sk Ka +L + ++Y++sLq XP_019178237.1 258 SHSLAERVRREKISERMKLLQDLVPGC----SKVTGKALMLDEIINYVQSLQ 305 8***********************9....556***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 465 aa Download sequence
MQKDYFFNGG GAPPPPLQFG QAAMADWGCS PEQYGQFLSP FAADMSAAYA ENNDNNVNNY 60 NTTDTSCFTT PAPLSGGAGY VERTAAKLSC LGSRSFNSRT GQFGLKNGDL PCRSNVQCIG 120 NAKLPRISSS PSLKQAGSPV QNKNSGPSPP ELGPGNNTHQ EFSLPDQTPT ESNPRKRKPI 180 SRRAAEEDDD AKGTETDDHS PAKRSKSAEE AGNDNNGVKT EELNNTANAG DGKPNQKPPE 240 PPKDYIHVRA RRGQATDSHS LAERVRREKI SERMKLLQDL VPGCSKVTGK ALMLDEIINY 300 VQSLQRQVEF LSMKLATVNP RMDVNIDSLA PKDICHPVYP LGSSAPAFHG QEQYPPEQIP 360 HLHTNLVNGA VSQRPVYPPL GTSPSPSLGM QFPPGDGFGE NLNQFPSLFE DDLQSIVHMG 420 FTRISSKDTL NVPRTHQTKT TFQSQFFHPR YQTPHGEEAI VHMKR

Sequence ? help Back to Top

Protein Sequence Length: 465 aa Download sequence

MQKDYFFNGG GAPPPPLQFG QAAMADWGCS PEQYGQFLSP FAADMSAAYA ENNDNNVNNY  60
NTTDTSCFTT PAPLSGGAGY VERTAAKLSC LGSRSFNSRT GQFGLKNGDL PCRSNVQCIG  120
NAKLPRISSS PSLKQAGSPV QNKNSGPSPP ELGPGNNTHQ EFSLPDQTPT ESNPRKRKPI  180
SRRAAEEDDD AKGTETDDHS PAKRSKSAEE AGNDNNGVKT EELNNTANAG DGKPNQKPPE  240
PPKDYIHVRA RRGQATDSHS LAERVRREKI SERMKLLQDL VPGCSKVTGK ALMLDEIINY  300
VQSLQRQVEF LSMKLATVNP RMDVNIDSLA PKDICHPVYP LGSSAPAFHG QEQYPPEQIP  360
HLHTNLVNGA VSQRPVYPPL GTSPSPSLGM QFPPGDGFGE NLNQFPSLFE DDLQSIVHMG  420
FTRISSKDTL NVPRTHQTKT TFQSQFFHPR YQTPHGEEAI VHMKR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	174	179	PRKRKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	2e-75	bHLH family protein