PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019178317.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB_related

Protein Properties

Length: 277aa MW: 29996 Da PI: 6.6796

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019178317.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	47.7	3.5e-15	22	64	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +W + ++ llv +++qlG++ W+ Ia++++ gR+++++k++w+ XP_019178317.1 22 KESWNEGDERLLVAVHEQLGNR-WSEIAKRIP-GRSENSIKNHWN 64 568*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence
MKIDLRFSDL LWESAGLTNK AKESWNEGDE RLLVAVHEQL GNRWSEIAKR IPGRSENSIK 60 NHWNATKRRL FSKRRMRSSS LQDAGSSLAG GRRSSVNVDI PPPPPPPAAA GDEQDSRDSP 120 SILTETYDDE MKFMQKLFGT SSSSSTSPTA ANNGSRSINS AEFAAFGRRT NEVDSVPEEE 180 SWSTYLASDP NLYEMGGADQ INSSPPQAPA ANNTNSGAGY GRAAGSHRGA PPLNRWCSSA 240 TAAAMDMDLM DLVSAASSSH YPHGYGSCCT KTPRQMF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18770.1	7e-23	MYB family protein