PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019178330.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB

Protein Properties

Length: 458aa MW: 49992 Da PI: 7.9229

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019178330.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57	4.6e-18	135	181	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd ll+++v+++G ++W+ Ia ++ gR +kqc++rw+++l XP_019178330.1 135 KGQWTEEEDRLLIRLVNEHGDRRWSVIATKIV-GRAGKQCRERWHNHL 181 799***************************.***********97 PP
2	Myb_DNA-binding	46.7	7.2e-15	187	229	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +W + ++ llv +++qlG++ W+ Ia++++ gR+++++k++w+ XP_019178330.1 187 KESWNEGDERLLVAVHEQLGNR-WSEIAKRIP-GRSENSIKNHWN 229 568*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 458 aa Download sequence
MDGSGGSGYR PFSINFPNPI LPPFPPVIVH RRYNHQEILP FPESFGSSSF HGGASSTNSR 60 LPAADAATAS WLSHLQNVNF GGSCGSLPHG LVAPPPASWG NQNRENAFAA GSLEETRREK 120 EHDERRSSNG VAFIKGQWTE EEDRLLIRLV NEHGDRRWSV IATKIVGRAG KQCRERWHNH 180 LRPDIKKESW NEGDERLLVA VHEQLGNRWS EIAKRIPGRS ENSIKNHWNA TKRRLFSKRR 240 MRSSSLQDAG SSRAGGRRSS VVLQNYIKYK YFSGLSLGQP GSSLVPEQPS IQQQVNVDDS 300 PSILTETYDD EMNFMQKLFG NSSSSSTSPT AANNGSRSDN SAEFAAFGRR TNEVDSVPEE 360 ESGSTYLASD PNLYEMGGAD QINSSTPQAP AANNTNSGAG YGSAAASHCG TPPLNRWSSS 420 ATAAAMDMDL MDLVSAASSS HCPHGYGSCC TKTPRQMF

Sequence ? help Back to Top

Protein Sequence Length: 458 aa Download sequence

MDGSGGSGYR PFSINFPNPI LPPFPPVIVH RRYNHQEILP FPESFGSSSF HGGASSTNSR  60
LPAADAATAS WLSHLQNVNF GGSCGSLPHG LVAPPPASWG NQNRENAFAA GSLEETRREK  120
EHDERRSSNG VAFIKGQWTE EEDRLLIRLV NEHGDRRWSV IATKIVGRAG KQCRERWHNH  180
LRPDIKKESW NEGDERLLVA VHEQLGNRWS EIAKRIPGRS ENSIKNHWNA TKRRLFSKRR  240
MRSSSLQDAG SSRAGGRRSS VVLQNYIKYK YFSGLSLGQP GSSLVPEQPS IQQQVNVDDS  300
PSILTETYDD EMNFMQKLFG NSSSSSTSPT AANNGSRSDN SAEFAAFGRR TNEVDSVPEE  360
ESGSTYLASD PNLYEMGGAD QINSSTPQAP AANNTNSGAG YGSAAASHCG TPPLNRWSSS  420
ATAAAMDMDL MDLVSAASSS HCPHGYGSCC TKTPRQMF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58850.1	2e-55	MYB family protein