PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019178373.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family LBD
Protein Properties Length: 220aa    MW: 23561.8 Da    PI: 8.083
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019178373.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260125.72.2e-3971081101
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkCa+dC++apyf+++q p++fa++hk+FGasnv+k+l +++ +er da+ ++ yeA+ar++dPvyG+v++i++lqqq+ +l+a+l
  XP_019178373.1   7 PCGACKFLRRKCAADCIFAPYFCSDQgPARFAAIHKVFGASNVSKMLMQVSVHERCDAVVTIDYEARARIKDPVYGCVAHIFALQQQVVSLQAQL 101
                     7*************************99******************************************************************* PP

          DUF260  95 allkeel 101
                      ++k++l
  XP_019178373.1 102 MQVKAQL 108
                     *999875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    
MAAAGSPCGA CKFLRRKCAA DCIFAPYFCS DQGPARFAAI HKVFGASNVS KMLMQVSVHE  60
RCDAVVTIDY EARARIKDPV YGCVAHIFAL QQQVVSLQAQ LMQVKAQLAQ TLMTSNTSAA  120
GNHQSWPSYT AAGGGAGGFP ASVNSAGSPQ SSMDSLEGYY SEGVGLVKQE MAAAMLQNCR  180
DNEDYCCYYG GNNNINGSRK RVSQTDLGEL QALALRMMRN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42430.15e-56LBD family protein