PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019178421.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB_related

Protein Properties

Length: 557aa MW: 64325 Da PI: 7.3885

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019178421.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.8	2.1e-07	442	489	4	48
S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 W+ E lv++v ++G g+W I r + +Rt+ ++k++w+++l XP_019178421.1 442 WSLTEVTNLVQGVSKYGVGRWIQIKRLFFrssPHRTPADLKDKWRNLL 489 999**********************999999***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 557 aa Download sequence
MLDNFGEMCK TEHLFDSSEH NLKPLSENAK VLIEESAPPF GEVGSVFSES EEEGMWLQLL 60 LEEPKYSNIL DTVLDINASN AQKNFYVNEY LDSTYHKADD GVLNSSFTEG NKTVEQFVDG 120 VSEENFNMVA CEENSDLDAC KDYLLDVMFD ERLHSVLNKE IYTKFDKQKL SSTREIENSK 180 KTRTWLLPNF DLPGDNSHIG QNMKIQLQIT SAQRSATRVF KSSLELSSSQ NNLRVDEMSS 240 DKLRKKLFGH QTIITDEHWL RHHISLGLQK SDKWKKNSSL KEFSIPNENK RVEVSSATED 300 LLKAPTPFSG VFSFKRKQRV QRVKKKKGNS AFCESLKNFF SECGRKKPEI RKKHTKDNVL 360 HDREGSNEHF RACTEVPRED TITRNEGHDH SSKRHEDNCD SLVESVEEDD DDDTYTGESE 420 DDTSENEWKT EKIQHHRKNH FWSLTEVTNL VQGVSKYGVG RWIQIKRLFF RSSPHRTPAD 480 LKDKWRNLLS ASCGRSQKRR LRPRQNGIPH SIPQHILHWV RDLAATHPYP RKKKKSGKPP 540 PLPSGLQILP QERNSLL

Sequence ? help Back to Top

Protein Sequence Length: 557 aa Download sequence

MLDNFGEMCK TEHLFDSSEH NLKPLSENAK VLIEESAPPF GEVGSVFSES EEEGMWLQLL  60
LEEPKYSNIL DTVLDINASN AQKNFYVNEY LDSTYHKADD GVLNSSFTEG NKTVEQFVDG  120
VSEENFNMVA CEENSDLDAC KDYLLDVMFD ERLHSVLNKE IYTKFDKQKL SSTREIENSK  180
KTRTWLLPNF DLPGDNSHIG QNMKIQLQIT SAQRSATRVF KSSLELSSSQ NNLRVDEMSS  240
DKLRKKLFGH QTIITDEHWL RHHISLGLQK SDKWKKNSSL KEFSIPNENK RVEVSSATED  300
LLKAPTPFSG VFSFKRKQRV QRVKKKKGNS AFCESLKNFF SECGRKKPEI RKKHTKDNVL  360
HDREGSNEHF RACTEVPRED TITRNEGHDH SSKRHEDNCD SLVESVEEDD DDDTYTGESE  420
DDTSENEWKT EKIQHHRKNH FWSLTEVTNL VQGVSKYGVG RWIQIKRLFF RSSPHRTPAD  480
LKDKWRNLLS ASCGRSQKRR LRPRQNGIPH SIPQHILHWV RDLAATHPYP RKKKKSGKPP  540
PLPSGLQILP QERNSLL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G17460.1	3e-18	MYB_related family protein