PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019178438.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB_related

Protein Properties

Length: 503aa MW: 58370.4 Da PI: 9.0869

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019178438.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23	1.9e-07	388	435	4	48
S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 W+ E lv++v ++G g+W I r + +Rt+ ++k++w+++l XP_019178438.1 388 WSLTEVTNLVQGVSKYGVGRWIQIKRLFFrssPHRTPADLKDKWRNLL 435 999**********************999999***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 503 aa Download sequence
MWLQLLLEEP KYSNILDTVL DINASNAQKN FYVNEYLDST YHKADDGVLN SSFTEGNKTV 60 EQFVDGVSEE NFNMVACEEN SDLDACKDYL LDVMFDERLH SVLNKEIYTK FDKQKLSSTR 120 EIENSKKTRT WLLPNFDLPG DNSHIGQNMK IQLQITSAQR SATRVFKSSL ELSSSQNNLR 180 VDEMSSDKLR KKLFGHQTII TDEHWLRHHI SLGLQKSDKW KKNSSLKEFS IPNENKRVEV 240 SSATEDLLKA PTPFSGVFSF KRKQRVQRVK KKKGNSAFCE SLKNFFSECG RKKPEIRKKH 300 TKDNVLHDRE GSNEHFRACT EVPREDTITR NEGHDHSSKR HEDNCDSLVE SVEEDDDDDT 360 YTGESEDDTS ENEWKTEKIQ HHRKNHFWSL TEVTNLVQGV SKYGVGRWIQ IKRLFFRSSP 420 HRTPADLKDK WRNLLSASCG RSQKRRLRPR QNGIPHSIPQ HILHWVRDLA ATHPYPRKKK 480 KSGKPPPLPS GLQILPQERN SLL

Sequence ? help Back to Top

Protein Sequence Length: 503 aa Download sequence

MWLQLLLEEP KYSNILDTVL DINASNAQKN FYVNEYLDST YHKADDGVLN SSFTEGNKTV  60
EQFVDGVSEE NFNMVACEEN SDLDACKDYL LDVMFDERLH SVLNKEIYTK FDKQKLSSTR  120
EIENSKKTRT WLLPNFDLPG DNSHIGQNMK IQLQITSAQR SATRVFKSSL ELSSSQNNLR  180
VDEMSSDKLR KKLFGHQTII TDEHWLRHHI SLGLQKSDKW KKNSSLKEFS IPNENKRVEV  240
SSATEDLLKA PTPFSGVFSF KRKQRVQRVK KKKGNSAFCE SLKNFFSECG RKKPEIRKKH  300
TKDNVLHDRE GSNEHFRACT EVPREDTITR NEGHDHSSKR HEDNCDSLVE SVEEDDDDDT  360
YTGESEDDTS ENEWKTEKIQ HHRKNHFWSL TEVTNLVQGV SKYGVGRWIQ IKRLFFRSSP  420
HRTPADLKDK WRNLLSASCG RSQKRRLRPR QNGIPHSIPQ HILHWVRDLA ATHPYPRKKK  480
KSGKPPPLPS GLQILPQERN SLL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G17460.1	3e-18	MYB_related family protein